nixpkgs/pkgs/applications/science/biology/raxml/default.nix

43 lines
1 KiB
Nix
Raw Normal View History

{ stdenv
, fetchFromGitHub
, zlib
, pkgs
, mpi ? false
}:
stdenv.mkDerivation rec {
pname = "RAxML";
version = "8.2.11";
name = "${pname}-${version}";
src = fetchFromGitHub {
owner = "stamatak";
repo = "standard-${pname}";
rev = "v${version}";
sha256 = "08fmqrr7y5a2fmmrgfz2p0hmn4mn71l5yspxfcwwsqbw6vmdfkhg";
};
buildInputs = if mpi then [ pkgs.openmpi ] else [];
# TODO darwin, AVX and AVX2 makefile targets
buildPhase = if mpi then ''
make -f Makefile.MPI.gcc
'' else ''
make -f Makefile.SSE3.PTHREADS.gcc
'';
installPhase = if mpi then ''
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
'' else ''
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
'';
meta = with stdenv.lib; {
description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
license = licenses.gpl3;
homepage = https://sco.h-its.org/exelixis/web/software/raxml/;
maintainers = [ maintainers.unode ];
platforms = [ "i686-linux" "x86_64-linux" ];
};
}