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python311Packages.scikit-survival: 0.21.0 -> 0.22.1; fix build

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disable test_coxnet on darwin aarch64 due to 2e-05 floating point mismatch
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Rob 2023-11-07 00:12:16 -08:00
parent 51438bb469
commit 20e41e0acd
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1 changed files with 13 additions and 5 deletions
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18
pkgs/development/python-modules/scikit-survival/default.nix
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@ -17,12 +17,12 @@
buildPythonPackage rec {
pname = "scikit-survival";
version = "0.21.0";
format = "setuptools";
version = "0.22.1";
pyproject = true;
src = fetchPypi {
inherit pname version;
hash = "sha256-rcdEtlmD3O2BQuwxRlOJ/HOEBdWJBRJR5UR6rZoeArw=";
hash = "sha256-Ft0Hg5iF9Sb9VSOsFMgfAvc4Nsam216kzt5Xv2iykv8=";
};
nativeBuildInputs = [
@ -45,6 +45,11 @@ buildPythonPackage rec {
nativeCheckInputs = [ pytestCheckHook ];
# treat numpy versions as lower bounds, same as setuptools build
postPatch = ''
sed -i 's/numpy==/numpy>=/' pyproject.toml
'';
# Hack needed to make pytest + cython work
# https://github.com/NixOS/nixpkgs/pull/82410#issuecomment-827186298
preCheck = ''
@ -63,10 +68,13 @@ buildPythonPackage rec {
"test_pandas_inputs"
"test_survival_svm"
"test_tree"
];
] ++ lib.optional (stdenv.isDarwin && stdenv.isAarch64)
# floating point mismatch on aarch64
# 27079905.88052468 to far from 27079905.880496684
"test_coxnet"
;
meta = with lib; {
broken = (stdenv.isLinux && stdenv.isAarch64);
description = "Survival analysis built on top of scikit-learn";
homepage = "https://github.com/sebp/scikit-survival";
license = licenses.gpl3Only;