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python3Packages: init shap at 0.36.0

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python3Packages: init slicer at 0.0.4
This commit is contained in:
Evax Software 2020-11-04 08:45:03 +01:00
parent 4303b0a517
commit 3f50332bc4
3 changed files with 103 additions and 0 deletions
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70
pkgs/development/python-modules/shap/default.nix Normal file
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@ -0,0 +1,70 @@
{ stdenv
, buildPythonPackage
, fetchFromGitHub
, isPy27
, pytestCheckHook
, numpy
, scipy
, scikitlearn
, pandas
, tqdm
, slicer
, numba
, matplotlib
, nose
, ipython
}:
buildPythonPackage rec {
pname = "shap";
version = "0.36.0";
disabled = isPy27;
src = fetchFromGitHub {
owner = "slundberg";
repo = pname;
rev = "v${version}";
sha256 = "1wxnxvbz6avzzfqjfbcqd4v879hvpq4021v31fhdpccr2q317rr9";
};
propagatedBuildInputs = [
numpy
scipy
scikitlearn
pandas
tqdm
slicer
numba
];
preCheck = ''
export HOME=$TMPDIR
# when importing the local copy the extension is not found
rm -r shap
'';
checkInputs = [ pytestCheckHook matplotlib nose ipython ];
# Those tests access the network
disabledTests = [
"test_kernel_shap_with_a1a_sparse_zero_background"
"test_kernel_shap_with_a1a_sparse_nonzero_background"
"test_kernel_shap_with_high_dim_sparse"
"test_sklearn_random_forest_newsgroups"
"test_sum_match_random_forest"
"test_sum_match_extra_trees"
"test_single_row_random_forest"
"test_sum_match_gradient_boosting_classifier"
"test_single_row_gradient_boosting_classifier"
"test_HistGradientBoostingClassifier_proba"
"test_HistGradientBoostingClassifier_multidim"
"test_sum_match_gradient_boosting_regressor"
"test_single_row_gradient_boosting_regressor"
];
meta = with stdenv.lib; {
description = "A unified approach to explain the output of any machine learning model";
homepage = "https://github.com/slundberg/shap";
license = licenses.mit;
maintainers = with maintainers; [ evax ];
platforms = platforms.unix;
};
}

29
pkgs/development/python-modules/slicer/default.nix Normal file
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@ -0,0 +1,29 @@
{ stdenv
, buildPythonPackage
, fetchPypi
, isPy27
, pytestCheckHook
, pandas
, pytorch
}:
buildPythonPackage rec {
pname = "slicer";
version = "0.0.4";
disabled = isPy27;
src = fetchPypi {
inherit pname version;
sha256 = "21d53aac4e78c93fd83c0fd2f8f9d8a2195ac079dffdc0da81cd749da0f2f355";
};
checkInputs = [ pytestCheckHook pandas pytorch ];
meta = with stdenv.lib; {
description = "Wraps tensor-like objects and provides a uniform slicing interface via __getitem__";
homepage = "https://github.com/interpretml/slicer";
license = licenses.mit;
maintainers = with maintainers; [ evax ];
platforms = platforms.unix;
};
}

4
pkgs/top-level/python-packages.nix
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@ -6547,6 +6547,8 @@ in {
shamir-mnemonic = callPackage ../development/python-modules/shamir-mnemonic { };
shap = callPackage ../development/python-modules/shap { };
shapely = callPackage ../development/python-modules/shapely { };
sharedmem = callPackage ../development/python-modules/sharedmem { };
@ -6628,6 +6630,8 @@ in {
slicedimage = callPackage ../development/python-modules/slicedimage { };
slicer = callPackage ../development/python-modules/slicer { };
slicerator = callPackage ../development/python-modules/slicerator { };
slimit = callPackage ../development/python-modules/slimit { };