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Merge pull request #211703 from dotlambda/cython-0.29.33

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python310Packages.cython: 0.29.32 -> 0.29.33
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Robert Schütz 2023-01-22 06:31:31 -08:00 committed by GitHub
commit 3fe688f431
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GPG key ID: 4AEE18F83AFDEB23
3 changed files with 359 additions and 9 deletions
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11
pkgs/development/python-modules/Cython/default.nix
View file

@ -24,12 +24,12 @@ let
in buildPythonPackage rec {
pname = "cython";
version = "0.29.32";
version = "0.29.33";
src = fetchPypi {
pname = "Cython";
inherit version;
hash = "sha256-hzPPR1i3kwTypOOev6xekjQbzke8zrJsElQ5iy+MGvc=";
hash = "sha256-UEB2TEpNLOlko5XaJPDRrlgUSZXauSxrlvRMP01yKGo=";
};
nativeBuildInputs = [
@ -46,11 +46,7 @@ in buildPythonPackage rec {
# backport Cython 3.0 trashcan support (https://github.com/cython/cython/pull/2842) to 0.X series.
# it does not affect Python code unless the code explicitly uses the feature.
# trashcan support is needed to avoid stack overflows during object deallocation in sage (https://trac.sagemath.org/ticket/27267)
(fetchpatch {
name = "trashcan.patch";
url = "https://github.com/cython/cython/commit/f781880b6780117660b2026caadf4a6d7905722f.patch";
sha256 = "sha256-SnjaJdBZxm3O5gJ5Dxut6+eeVtZv+ygUUNwAwgoiFxg=";
})
./trashcan.patch
# The above commit introduces custom trashcan macros, as well as
# compiler changes to use them in Cython-emitted code. The latter
# change is still useful, but the former has been upstreamed as of
@ -79,6 +75,7 @@ in buildPythonPackage rec {
# doCheck = !stdenv.isDarwin;
meta = {
changelog = "https://github.com/cython/cython/blob/${version}/CHANGES.rst";
description = "An optimising static compiler for both the Python programming language and the extended Cython programming language";
homepage = "https://cython.org";
license = lib.licenses.asl20;

354
pkgs/development/python-modules/Cython/trashcan.patch Normal file
View file

@ -0,0 +1,354 @@
From 1b77e35d848340f2c5f4c9b82965c25a0572d48f Mon Sep 17 00:00:00 2001
From: Jeroen Demeyer <J.Demeyer@UGent.be>
Date: Thu, 14 Feb 2019 10:02:41 +0100
Subject: [PATCH] @cython.trashcan directive to enable the Python trashcan for
deallocations
---
Cython/Compiler/ModuleNode.py | 10 +++
Cython/Compiler/Options.py | 2 +
Cython/Compiler/PyrexTypes.py | 8 +-
Cython/Compiler/Symtab.py | 18 +++-
Cython/Utility/ExtensionTypes.c | 43 ++++++++++
tests/run/trashcan.pyx | 148 ++++++++++++++++++++++++++++++++
6 files changed, 227 insertions(+), 2 deletions(-)
create mode 100644 tests/run/trashcan.pyx
diff --git a/Cython/Compiler/ModuleNode.py b/Cython/Compiler/ModuleNode.py
index 56845330d..3a3e8a956 100644
--- a/Cython/Compiler/ModuleNode.py
+++ b/Cython/Compiler/ModuleNode.py
@@ -1443,6 +1443,7 @@ class ModuleNode(Nodes.Node, Nodes.BlockNode):
is_final_type = scope.parent_type.is_final_type
needs_gc = scope.needs_gc()
+ needs_trashcan = scope.needs_trashcan()
weakref_slot = scope.lookup_here("__weakref__") if not scope.is_closure_class_scope else None
if weakref_slot not in scope.var_entries:
@@ -1481,6 +1482,11 @@ class ModuleNode(Nodes.Node, Nodes.BlockNode):
# running this destructor.
code.putln("PyObject_GC_UnTrack(o);")
+ if needs_trashcan:
+ code.globalstate.use_utility_code(
+ UtilityCode.load_cached("PyTrashcan", "ExtensionTypes.c"))
+ code.putln("__Pyx_TRASHCAN_BEGIN(o, %s)" % slot_func_cname)
+
# call the user's __dealloc__
self.generate_usr_dealloc_call(scope, code)
@@ -1554,6 +1560,10 @@ class ModuleNode(Nodes.Node, Nodes.BlockNode):
code.putln("(*Py_TYPE(o)->tp_free)(o);")
if freelist_size:
code.putln("}")
+
+ if needs_trashcan:
+ code.putln("__Pyx_TRASHCAN_END")
+
code.putln(
"}")
diff --git a/Cython/Compiler/Options.py b/Cython/Compiler/Options.py
index d03119fca..05a728135 100644
--- a/Cython/Compiler/Options.py
+++ b/Cython/Compiler/Options.py
@@ -319,6 +319,7 @@ directive_types = {
'freelist': int,
'c_string_type': one_of('bytes', 'bytearray', 'str', 'unicode'),
'c_string_encoding': normalise_encoding_name,
+ 'trashcan': bool,
'cpow': bool
}
@@ -362,6 +363,7 @@ directive_scopes = { # defaults to available everywhere
'np_pythran': ('module',),
'fast_gil': ('module',),
'iterable_coroutine': ('module', 'function'),
+ 'trashcan' : ('cclass',),
}
diff --git a/Cython/Compiler/PyrexTypes.py b/Cython/Compiler/PyrexTypes.py
index c309bd04b..9231130b5 100644
--- a/Cython/Compiler/PyrexTypes.py
+++ b/Cython/Compiler/PyrexTypes.py
@@ -1129,6 +1129,7 @@ class PyObjectType(PyrexType):
is_extern = False
is_subclassed = False
is_gc_simple = False
+ builtin_trashcan = False # builtin type using trashcan
def __str__(self):
return "Python object"
@@ -1183,10 +1184,14 @@ class PyObjectType(PyrexType):
builtin_types_that_cannot_create_refcycles = set([
- 'bool', 'int', 'long', 'float', 'complex',
+ 'object', 'bool', 'int', 'long', 'float', 'complex',
'bytearray', 'bytes', 'unicode', 'str', 'basestring'
])
+builtin_types_with_trashcan = set([
+ 'dict', 'list', 'set', 'frozenset', 'tuple', 'type',
+])
+
class BuiltinObjectType(PyObjectType):
# objstruct_cname string Name of PyObject struct
@@ -1211,6 +1216,7 @@ class BuiltinObjectType(PyObjectType):
self.typeptr_cname = "(&%s)" % cname
self.objstruct_cname = objstruct_cname
self.is_gc_simple = name in builtin_types_that_cannot_create_refcycles
+ self.builtin_trashcan = name in builtin_types_with_trashcan
if name == 'type':
# Special case the type type, as many C API calls (and other
# libraries) actually expect a PyTypeObject* for type arguments.
diff --git a/Cython/Compiler/Symtab.py b/Cython/Compiler/Symtab.py
index 7361a55ae..f0c311ba6 100644
--- a/Cython/Compiler/Symtab.py
+++ b/Cython/Compiler/Symtab.py
@@ -2043,7 +2043,7 @@ class PyClassScope(ClassScope):
class CClassScope(ClassScope):
# Namespace of an extension type.
#
- # parent_type CClassType
+ # parent_type PyExtensionType
# #typeobj_cname string or None
# #objstruct_cname string
# method_table_cname string
@@ -2087,6 +2087,22 @@ class CClassScope(ClassScope):
return not self.parent_type.is_gc_simple
return False
+ def needs_trashcan(self):
+ # If the trashcan directive is explicitly set to False,
+ # unconditionally disable the trashcan.
+ directive = self.directives.get('trashcan')
+ if directive is False:
+ return False
+ # If the directive is set to True and the class has Python-valued
+ # C attributes, then it should use the trashcan in tp_dealloc.
+ if directive and self.has_cyclic_pyobject_attrs:
+ return True
+ # Use the trashcan if the base class uses it
+ base_type = self.parent_type.base_type
+ if base_type and base_type.scope is not None:
+ return base_type.scope.needs_trashcan()
+ return self.parent_type.builtin_trashcan
+
def needs_tp_clear(self):
"""
Do we need to generate an implementation for the tp_clear slot? Can
diff --git a/Cython/Utility/ExtensionTypes.c b/Cython/Utility/ExtensionTypes.c
index dc187ab49..f359165df 100644
--- a/Cython/Utility/ExtensionTypes.c
+++ b/Cython/Utility/ExtensionTypes.c
@@ -119,6 +119,49 @@ static int __Pyx_PyType_Ready(PyTypeObject *t) {
return r;
}
+/////////////// PyTrashcan.proto ///////////////
+
+// These macros are taken from https://github.com/python/cpython/pull/11841
+// Unlike the Py_TRASHCAN_SAFE_BEGIN/Py_TRASHCAN_SAFE_END macros, they
+// allow dealing correctly with subclasses.
+
+// This requires CPython version >= 2.7.4
+// (or >= 3.2.4 but we don't support such old Python 3 versions anyway)
+#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x02070400
+#define __Pyx_TRASHCAN_BEGIN_CONDITION(op, cond) \
+ do { \
+ PyThreadState *_tstate = NULL; \
+ // If "cond" is false, then _tstate remains NULL and the deallocator
+ // is run normally without involving the trashcan
+ if (cond) { \
+ _tstate = PyThreadState_GET(); \
+ if (_tstate->trash_delete_nesting >= PyTrash_UNWIND_LEVEL) { \
+ // Store the object (to be deallocated later) and jump past
+ // Py_TRASHCAN_END, skipping the body of the deallocator
+ _PyTrash_thread_deposit_object((PyObject*)(op)); \
+ break; \
+ } \
+ ++_tstate->trash_delete_nesting; \
+ }
+ // The body of the deallocator is here.
+#define __Pyx_TRASHCAN_END \
+ if (_tstate) { \
+ --_tstate->trash_delete_nesting; \
+ if (_tstate->trash_delete_later && _tstate->trash_delete_nesting <= 0) \
+ _PyTrash_thread_destroy_chain(); \
+ } \
+ } while (0);
+
+#define __Pyx_TRASHCAN_BEGIN(op, dealloc) __Pyx_TRASHCAN_BEGIN_CONDITION(op, \
+ Py_TYPE(op)->tp_dealloc == (destructor)(dealloc))
+
+#else
+// The trashcan is a no-op on other Python implementations
+// or old CPython versions
+#define __Pyx_TRASHCAN_BEGIN(op, dealloc)
+#define __Pyx_TRASHCAN_END
+#endif
+
/////////////// CallNextTpDealloc.proto ///////////////
static void __Pyx_call_next_tp_dealloc(PyObject* obj, destructor current_tp_dealloc);
diff --git a/tests/run/trashcan.pyx b/tests/run/trashcan.pyx
new file mode 100644
index 000000000..93a501ff8
--- /dev/null
+++ b/tests/run/trashcan.pyx
@@ -0,0 +1,148 @@
+# mode: run
+
+cimport cython
+
+
+# Count number of times an object was deallocated twice. This should remain 0.
+cdef int double_deallocations = 0
+def assert_no_double_deallocations():
+ global double_deallocations
+ err = double_deallocations
+ double_deallocations = 0
+ assert not err
+
+
+# Compute x = f(f(f(...(None)...))) nested n times and throw away the result.
+# The real test happens when exiting this function: then a big recursive
+# deallocation of x happens. We are testing two things in the tests below:
+# that Python does not crash and that no double deallocation happens.
+# See also https://github.com/python/cpython/pull/11841
+def recursion_test(f, int n=2**20):
+ x = None
+ cdef int i
+ for i in range(n):
+ x = f(x)
+
+
+@cython.trashcan(True)
+cdef class Recurse:
+ """
+ >>> recursion_test(Recurse)
+ >>> assert_no_double_deallocations()
+ """
+ cdef public attr
+ cdef int deallocated
+
+ def __init__(self, x):
+ self.attr = x
+
+ def __dealloc__(self):
+ # Check that we're not being deallocated twice
+ global double_deallocations
+ double_deallocations += self.deallocated
+ self.deallocated = 1
+
+
+cdef class RecurseSub(Recurse):
+ """
+ >>> recursion_test(RecurseSub)
+ >>> assert_no_double_deallocations()
+ """
+ cdef int subdeallocated
+
+ def __dealloc__(self):
+ # Check that we're not being deallocated twice
+ global double_deallocations
+ double_deallocations += self.subdeallocated
+ self.subdeallocated = 1
+
+
+@cython.freelist(4)
+@cython.trashcan(True)
+cdef class RecurseFreelist:
+ """
+ >>> recursion_test(RecurseFreelist)
+ >>> recursion_test(RecurseFreelist, 1000)
+ >>> assert_no_double_deallocations()
+ """
+ cdef public attr
+ cdef int deallocated
+
+ def __init__(self, x):
+ self.attr = x
+
+ def __dealloc__(self):
+ # Check that we're not being deallocated twice
+ global double_deallocations
+ double_deallocations += self.deallocated
+ self.deallocated = 1
+
+
+# Subclass of list => uses trashcan by default
+# As long as https://github.com/python/cpython/pull/11841 is not fixed,
+# this does lead to double deallocations, so we skip that check.
+cdef class RecurseList(list):
+ """
+ >>> RecurseList(42)
+ [42]
+ >>> recursion_test(RecurseList)
+ """
+ def __init__(self, x):
+ super().__init__((x,))
+
+
+# Some tests where the trashcan is NOT used. When the trashcan is not used
+# in a big recursive deallocation, the __dealloc__s of the base classs are
+# only run after the __dealloc__s of the subclasses.
+# We use this to detect trashcan usage.
+cdef int base_deallocated = 0
+cdef int trashcan_used = 0
+def assert_no_trashcan_used():
+ global base_deallocated, trashcan_used
+ err = trashcan_used
+ trashcan_used = base_deallocated = 0
+ assert not err
+
+
+cdef class Base:
+ def __dealloc__(self):
+ global base_deallocated
+ base_deallocated = 1
+
+
+# Trashcan disabled by default
+cdef class Sub1(Base):
+ """
+ >>> recursion_test(Sub1, 100)
+ >>> assert_no_trashcan_used()
+ """
+ cdef public attr
+
+ def __init__(self, x):
+ self.attr = x
+
+ def __dealloc__(self):
+ global base_deallocated, trashcan_used
+ trashcan_used += base_deallocated
+
+
+@cython.trashcan(True)
+cdef class Middle(Base):
+ cdef public foo
+
+
+# Trashcan disabled explicitly
+@cython.trashcan(False)
+cdef class Sub2(Middle):
+ """
+ >>> recursion_test(Sub2, 1000)
+ >>> assert_no_trashcan_used()
+ """
+ cdef public attr
+
+ def __init__(self, x):
+ self.attr = x
+
+ def __dealloc__(self):
+ global base_deallocated, trashcan_used
+ trashcan_used += base_deallocated
--
2.39.0

3
pkgs/development/python-modules/hatch-requirements-txt/default.nix
View file

@ -1,7 +1,6 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
, hatch
, hatchling
, packaging
, pytestCheckHook
@ -20,7 +19,7 @@ buildPythonPackage rec {
};
nativeBuildInputs = [
hatch
hatchling
];
propagatedBuildInputs = [