From a93f2af20beadfa2af905c9ff2d42ecbc7ad4ce5 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Mon, 19 Jul 2021 16:19:27 -0400
Subject: [PATCH 1/2] snakemake: add missing optional dependenices

These are needed to generate reports
---
 pkgs/applications/science/misc/snakemake/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix
index 5ecde8396069..ece6b1bf538a 100644
--- a/pkgs/applications/science/misc/snakemake/default.nix
+++ b/pkgs/applications/science/misc/snakemake/default.nix
@@ -12,10 +12,13 @@ python3Packages.buildPythonApplication rec {
     docutils
     filelock
     GitPython
+    jinja2
     jsonschema
     nbformat
+    networkx
     psutil
     pulp
+    pygraphviz
     pyyaml
     ratelimiter
     requests

From 3a79b1fece0d9457d0394e45e13d818424cfd427 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Mon, 19 Jul 2021 16:22:36 -0400
Subject: [PATCH 2/2] snakemake: 6.5.3 -> 6.6.1

---
 pkgs/applications/science/misc/snakemake/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix
index ece6b1bf538a..5270cac57823 100644
--- a/pkgs/applications/science/misc/snakemake/default.nix
+++ b/pkgs/applications/science/misc/snakemake/default.nix
@@ -2,7 +2,7 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "snakemake";
-  version = "6.5.3";
+  version = "6.6.1";
 
   propagatedBuildInputs = with python3Packages; [
     appdirs
@@ -31,7 +31,7 @@ python3Packages.buildPythonApplication rec {
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "a06839346425c74542e6e2e6047db3133cd747ef89e1ebd87dad1fbba041f62d";
+    sha256 = "91637a801342f3bc349c033b284fef7c0201b4e5e29d5650cb6c7f69096d4184";
   };
 
   doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json