From 7c09cfdc1ad7de866178550fcaeac6076b77024f Mon Sep 17 00:00:00 2001
From: Bruno Bzeznik <Bruno.Bzeznik@imag.fr>
Date: Mon, 18 Jul 2022 15:50:55 +0200
Subject: [PATCH] treemix: init at 1.13

---
 .../science/biology/treemix/default.nix       | 27 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/applications/science/biology/treemix/default.nix

diff --git a/pkgs/applications/science/biology/treemix/default.nix b/pkgs/applications/science/biology/treemix/default.nix
new file mode 100644
index 000000000000..7bf966919a67
--- /dev/null
+++ b/pkgs/applications/science/biology/treemix/default.nix
@@ -0,0 +1,27 @@
+{ lib
+, stdenv
+, fetchurl
+, zlib
+, gsl
+, boost
+}:
+
+stdenv.mkDerivation rec {
+  pname = "treemix";
+  version = "1.13";
+
+  src = fetchurl {
+    url = "https://bitbucket.org/nygcresearch/treemix/downloads/${pname}-${version}.tar.gz";
+    sha256 = "1nd3rzsdgk47r8b8k43mdfvaagln533sm08s1jr0dz8km8nlym7y";
+  };
+
+  buildInputs = [ zlib gsl boost ];
+
+  meta = with lib ; {
+    description = "Inference of patterns of population splitting and mixing from genome-wide allele frequency data";
+    homepage = "https://bitbucket.org/nygcresearch/treemix/wiki/Home";
+    license = licenses.gpl3Only;
+    maintainers = [ maintainers.bzizou ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 7aa11d31370c..2e646e55bbf3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -33543,6 +33543,8 @@ with pkgs;
 
   tebreak = callPackage ../applications/science/biology/tebreak { };
 
+  treemix = callPackage ../applications/science/biology/treemix { };
+
   trimal = callPackage ../applications/science/biology/trimal { };
 
   truvari = callPackage ../applications/science/biology/truvari { };