cafkafk/nixpkgs
cafkafk/nixpkgs
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions 2

python3Packages.dendropy: 4.4.0 -> 4.5.1

Browse source
This commit is contained in:
Fabian Affolter 2021-05-14 23:35:34 +02:00
parent 06d8a6f99d
commit 90e41651fa
1 changed files with 21 additions and 19 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

40
pkgs/development/python-modules/dendropy/default.nix
View file

@ -1,38 +1,40 @@
{ lib
, pkgs
, buildPythonPackage
, fetchFromGitHub
, pytest
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "DendroPy";
version = "4.4.0";
pname = "dendropy";
version = "4.5.1";
# tests are incorrectly packaged in pypi version
src = fetchFromGitHub {
owner = "jeetsukumaran";
repo = pname;
rev = "v${version}";
sha256 = "097hfyv2kaf4x92i4rjx0paw2cncxap48qivv8zxng4z7nhid0x9";
sha256 = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM=";
};
preCheck = ''
# Needed for unicode python tests
export LC_ALL="en_US.UTF-8"
cd tests # to find the 'support' module
'';
checkInputs = [
pytestCheckHook
];
checkInputs = [ pytest pkgs.glibcLocales ];
disabledTests = [
# FileNotFoundError: [Errno 2] No such file or directory: 'paup'
"test_basic_split_count_with_incorrect_rootings_raises_error"
"test_basic_split_count_with_incorrect_weight_treatment_raises_error"
"test_basic_split_counting_under_different_rootings"
"test_group1"
# AssertionError: 6 != 5
"test_by_num_lineages"
];
checkPhase = ''
pytest -k 'not test_dataio_nexml_reader_tree_list and not test_pscores_with'
'';
pythonImportsCheck = [ "dendropy" ];
meta = {
meta = with lib; {
description = "Python library for phylogenetic computing";
homepage = "https://dendropy.org/";
description = "A Python library for phylogenetic computing";
maintainers = with lib.maintainers; [ unode ];
license = lib.licenses.bsd3;
license = licenses.bsd3;
maintainers = with maintainers; [ unode ];
};
}