Merge pull request from bcdarwin/update-jaxopt

python310Packages.jaxopt: 0.5.5 -> 0.8.1
This commit is contained in:
Mario Rodas 2023-10-11 18:44:06 -05:00 committed by GitHub
commit b11ced7a9c
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4 changed files with 28 additions and 25 deletions
pkgs/development/python-modules

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@ -17,16 +17,16 @@
buildPythonPackage rec { buildPythonPackage rec {
pname = "bambi"; pname = "bambi";
version = "0.10.0"; version = "0.12.0";
format = "pyproject"; pyproject = true;
disabled = pythonOlder "3.8"; disabled = pythonOlder "3.9";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "bambinos"; owner = "bambinos";
repo = pname; repo = "bambi";
rev = "refs/tags/${version}"; rev = "refs/tags/${version}";
hash = "sha256-D04eTAlckEqgKA+59BRljlyneHYoqqZvLYmt/gBLHcU="; hash = "sha256-36D8u813v2vWQdNqBWfM8YVnAJuLGvn5vqdHs94odmU=";
}; };
nativeBuildInputs = [ nativeBuildInputs = [
@ -55,16 +55,18 @@ buildPythonPackage rec {
disabledTests = [ disabledTests = [
# Tests require network access # Tests require network access
"test_alias_equal_to_name"
"test_custom_prior" "test_custom_prior"
"test_data_is_copied" "test_data_is_copied"
"test_distributional_model" "test_distributional_model"
"test_extra_namespace"
"test_gamma_with_splines" "test_gamma_with_splines"
"test_non_distributional_model_with_categories"
"test_non_distributional_model" "test_non_distributional_model"
"test_normal_with_splines" "test_normal_with_splines"
"test_predict_offset" "test_predict_offset"
# Assertion issue "test_predict_new_groups"
"test_custom_likelihood_function" "test_predict_new_groups_fail"
"test_set_alias_warnings"
]; ];
pythonImportsCheck = [ pythonImportsCheck = [
@ -74,6 +76,7 @@ buildPythonPackage rec {
meta = with lib; { meta = with lib; {
homepage = "https://bambinos.github.io/bambi"; homepage = "https://bambinos.github.io/bambi";
description = "High-level Bayesian model-building interface"; description = "High-level Bayesian model-building interface";
changelog = "https://github.com/bambinos/bambi/releases/tag/${version}";
license = licenses.mit; license = licenses.mit;
maintainers = with maintainers; [ bcdarwin ]; maintainers = with maintainers; [ bcdarwin ];
}; };

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@ -2,8 +2,8 @@
, buildPythonPackage , buildPythonPackage
, pythonOlder , pythonOlder
, fetchFromGitHub , fetchFromGitHub
, fetchpatch
, pytestCheckHook , pytestCheckHook
, setuptools-scm
, fastprogress , fastprogress
, jax , jax
, jaxlib , jaxlib
@ -14,24 +14,21 @@
buildPythonPackage rec { buildPythonPackage rec {
pname = "blackjax"; pname = "blackjax";
version = "0.9.6"; version = "1.0.0";
disabled = pythonOlder "3.7"; pyproject = true;
disabled = pythonOlder "3.8";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "blackjax-devs"; owner = "blackjax-devs";
repo = pname; repo = pname;
rev = "refs/tags/${version}"; rev = "refs/tags/${version}";
hash = "sha256-EieDu9SJxi2cp1bHlxX4vvFZeDGMGIm24GoR8nSyjvE="; hash = "sha256-hqOKSHyZ/BmOu6MJLeecD3H1BbLbZqywmlBzn3xjQRk=";
}; };
patches = [ nativeBuildInputs = [ setuptools-scm ];
# remove in next release
(fetchpatch { env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
name = "fix-lbfgs-args";
url = "https://github.com/blackjax-devs/blackjax/commit/1aaa6f64bbcb0557b658604b2daba826e260cbc6.patch";
hash = "sha256-XyjorXPH5Ap35Tv1/lTeTWamjplJF29SsvOq59ypftE=";
})
];
propagatedBuildInputs = [ propagatedBuildInputs = [
fastprogress fastprogress
@ -56,6 +53,7 @@ buildPythonPackage rec {
meta = with lib; { meta = with lib; {
homepage = "https://blackjax-devs.github.io/blackjax"; homepage = "https://blackjax-devs.github.io/blackjax";
description = "Sampling library designed for ease of use, speed and modularity"; description = "Sampling library designed for ease of use, speed and modularity";
changelog = "https://github.com/blackjax-devs/blackjax/releases/tag/${version}";
license = licenses.asl20; license = licenses.asl20;
maintainers = with maintainers; [ bcdarwin ]; maintainers = with maintainers; [ bcdarwin ];
}; };

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@ -15,7 +15,7 @@
buildPythonPackage rec { buildPythonPackage rec {
pname = "chex"; pname = "chex";
version = "0.1.82"; version = "0.1.83";
format = "setuptools"; format = "setuptools";
disabled = pythonOlder "3.9"; disabled = pythonOlder "3.9";
@ -24,7 +24,7 @@ buildPythonPackage rec {
owner = "deepmind"; owner = "deepmind";
repo = pname; repo = pname;
rev = "refs/tags/v${version}"; rev = "refs/tags/v${version}";
hash = "sha256-xBq22AaR2Tp1NSPefEyvCDeUYqRZlAf5LVHWo0luiXk="; hash = "sha256-iEachJf5NjOnkMWdP0aVQHWNPgUUBkMnzHKq3GP7t4w=";
}; };
propagatedBuildInputs = [ propagatedBuildInputs = [
@ -49,6 +49,7 @@ buildPythonPackage rec {
meta = with lib; { meta = with lib; {
description = "Chex is a library of utilities for helping to write reliable JAX code."; description = "Chex is a library of utilities for helping to write reliable JAX code.";
homepage = "https://github.com/deepmind/chex"; homepage = "https://github.com/deepmind/chex";
changelog = "https://github.com/google-deepmind/chex/releases/tag/v${version}";
license = licenses.asl20; license = licenses.asl20;
maintainers = with maintainers; [ ndl ]; maintainers = with maintainers; [ ndl ];
}; };

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@ -16,16 +16,16 @@
buildPythonPackage rec { buildPythonPackage rec {
pname = "jaxopt"; pname = "jaxopt";
version = "0.5.5"; version = "0.8.1";
format = "setuptools"; format = "setuptools";
disabled = pythonOlder "3.7"; disabled = pythonOlder "3.8";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "google"; owner = "google";
repo = pname; repo = pname;
rev = "refs/tags/${pname}-v${version}"; rev = "refs/tags/${pname}-v${version}";
hash = "sha256-WOsr/Dvguu9/qX6+LMlAKM3EANtYPtDu8Uo2157+bs0="; hash = "sha256-5+GfRFzXyc1Ukp86NeK0qstTq9fkx+eDb4iXvxzRoKs=";
}; };
propagatedBuildInputs = [ propagatedBuildInputs = [
@ -60,6 +60,7 @@ buildPythonPackage rec {
meta = with lib; { meta = with lib; {
homepage = "https://jaxopt.github.io"; homepage = "https://jaxopt.github.io";
description = "Hardware accelerated, batchable and differentiable optimizers in JAX"; description = "Hardware accelerated, batchable and differentiable optimizers in JAX";
changelog = "https://github.com/google/jaxopt/releases/tag/jaxopt-v${version}";
license = licenses.asl20; license = licenses.asl20;
maintainers = with maintainers; [ bcdarwin ]; maintainers = with maintainers; [ bcdarwin ];
}; };