From dd6728ca40bfa6de9dafde35341dfb85eb5916b7 Mon Sep 17 00:00:00 2001
From: Weijia Wang <9713184+wegank@users.noreply.github.com>
Date: Sun, 10 Dec 2023 02:24:15 +0100
Subject: [PATCH] bppsuite: remove stdenv overrides

---
 .../science/biology/bpp-core/default.nix      |  9 ++++++++-
 pkgs/top-level/all-packages.nix               | 20 +++++--------------
 2 files changed, 13 insertions(+), 16 deletions(-)

diff --git a/pkgs/development/libraries/science/biology/bpp-core/default.nix b/pkgs/development/libraries/science/biology/bpp-core/default.nix
index 953fe50a4b03..0d0e3c114920 100644
--- a/pkgs/development/libraries/science/biology/bpp-core/default.nix
+++ b/pkgs/development/libraries/science/biology/bpp-core/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, cmake }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake }:
 
 stdenv.mkDerivation rec {
   pname = "bpp-core";
@@ -10,6 +10,13 @@ stdenv.mkDerivation rec {
     sha256 = "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv";
   };
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/BioPP/bpp-core/commit/d450e8033b06e80dff9c2236fb7ce1f3ced5dcbb.patch";
+      hash = "sha256-9t68mrK7KNs5BxljKMaA+XskCcKDNv8DNCVUYunoNdw=";
+    })
+  ];
+
   nativeBuildInputs = [ cmake ];
 
   postFixup = ''
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 47e6879dd8aa..6760b0e1e0e4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -38935,25 +38935,15 @@ with pkgs;
 
   blast-bin = callPackage ../applications/science/biology/blast/bin.nix { };
 
-  bpp-core = callPackage ../development/libraries/science/biology/bpp-core {
-    stdenv = gcc10StdenvCompat;
-  };
+  bpp-core = callPackage ../development/libraries/science/biology/bpp-core { };
 
-  bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl {
-    stdenv = gcc10StdenvCompat;
-  };
+  bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl { };
 
-  bpp-popgen = callPackage ../development/libraries/science/biology/bpp-popgen {
-    stdenv = gcc10StdenvCompat;
-  };
+  bpp-popgen = callPackage ../development/libraries/science/biology/bpp-popgen { };
 
-  bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq {
-    stdenv = gcc10StdenvCompat;
-  };
+  bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq { };
 
-  bppsuite = callPackage ../applications/science/biology/bppsuite {
-    stdenv = gcc10StdenvCompat;
-  };
+  bppsuite = callPackage ../applications/science/biology/bppsuite { };
 
   cd-hit = callPackage ../applications/science/biology/cd-hit {
     inherit (llvmPackages) openmp;