From 4998dce23bc5a990616272961756188b97c547d5 Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Fri, 9 Feb 2024 14:47:50 -0500
Subject: [PATCH] python311Packages.medpy: init at 0.5.0rc1

---
 .../python-modules/medpy/default.nix          | 64 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 66 insertions(+)
 create mode 100644 pkgs/development/python-modules/medpy/default.nix

diff --git a/pkgs/development/python-modules/medpy/default.nix b/pkgs/development/python-modules/medpy/default.nix
new file mode 100644
index 000000000000..6fc6242c155c
--- /dev/null
+++ b/pkgs/development/python-modules/medpy/default.nix
@@ -0,0 +1,64 @@
+{ lib
+, buildPythonPackage
+, pythonOlder
+, fetchFromGitHub
+, setuptools
+, unittestCheckHook
+, boost
+, numpy
+, scipy
+, simpleitk
+}:
+
+buildPythonPackage rec {
+  pname = "medpy";
+  version = "0.5.0rc1";
+  pyproject = true;
+
+  disabled = pythonOlder "3.6";
+
+  src = fetchFromGitHub {
+    owner = "loli";
+    repo = "medpy";
+    rev = "refs/tags/${version}";
+    hash = "sha256-W62LjstH42OzNG+vMkuApUWczTNugJGKuuoeeS5ok4U=";
+  };
+
+  nativeBuildInputs = [
+    setuptools
+  ];
+
+  propagatedBuildInputs = [
+    boost
+    numpy
+    scipy
+    simpleitk
+  ];
+
+  nativeCheckInputs = [
+    unittestCheckHook
+  ];
+  preCheck = ''
+    rm -r medpy/  # prevent importing from build directory at test time
+    rm -r tests/graphcut_  # SIGILL at test time
+  '';
+
+  pythonImportsCheck = [
+    "medpy"
+    "medpy.core"
+    "medpy.features"
+    "medpy.filter"
+    "medpy.graphcut"
+    "medpy.io"
+    "medpy.metric"
+    "medpy.utilities"
+  ];
+
+  meta = with lib; {
+    description = "Medical image processing library";
+    homepage = "https://loli.github.io/medpy";
+    changelog = "https://github.com/loli/medpy/releases/tag/${version}";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index f625410bf8d1..f0c21e077bb9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -6957,6 +6957,8 @@ self: super: with self; {
 
   mediapy = callPackage ../development/python-modules/mediapy { };
 
+  medpy = callPackage ../development/python-modules/medpy { };
+
   meeko = callPackage ../development/python-modules/meeko { };
 
   meep = callPackage ../development/python-modules/meep { };