zeek: 5.2.0 -> 6.0.1

pkgs/applications/networking/ids/zeek/avoid-broken-tests.patch

@@ -1,16 +0,0 @@
-diff --git a/auxil/spicy/spicy/hilti/toolchain/CMakeLists.txt b/auxil/spicy/spicy/hilti/toolchain/CMakeLists.txt
-index bafbabf1..0579f20a 100644
---- a/auxil/spicy/spicy/hilti/toolchain/CMakeLists.txt
-+++ b/auxil/spicy/spicy/hilti/toolchain/CMakeLists.txt
-@@ -188,11 +188,3 @@ install_headers(include hilti)
- install_headers(${PROJECT_BINARY_DIR}/include/hilti hilti)
- install(CODE "file(REMOVE \"\$ENV\{DESTDIR\}${CMAKE_INSTALL_FULL_INCLUDEDIR}/hilti/hilti\")"
- )# Get rid of symlink.
--
--##### Tests
--
--add_executable(hilti-toolchain-tests tests/main.cc tests/id-base.cc tests/visitor.cc tests/util.cc)
--hilti_link_executable_in_tree(hilti-toolchain-tests PRIVATE)
--target_link_libraries(hilti-toolchain-tests PRIVATE doctest)
--target_compile_options(hilti-toolchain-tests PRIVATE "-Wall")
--add_test(NAME hilti-toolchain-tests COMMAND ${PROJECT_BINARY_DIR}/bin/hilti-toolchain-tests)

pkgs/applications/networking/ids/zeek/broker/default.nix

@@ -14,8 +14,8 @@ let
   src-cmake = fetchFromGitHub {
     owner = "zeek";
     repo = "cmake";
-    rev = "9f05362a5c33ed11dab37d2dedf74206d59d8f6d";
-    hash = "sha256-UfPPbwLJcI6+8EYLKRcBhxashEkCTJ2Gj1JOtFayot8=";
+    rev = "b191c36167bc0d6bd9f059b01ad4c99be98488d9";
+    hash = "sha256-h6xPCcdTnREeDsGQhWt2w4yJofpr7g4a8xCOB2e0/qQ=";
   };
   src-3rdparty = fetchFromGitHub {
     owner = "zeek";
@@ -28,17 +28,13 @@ let
     src = fetchFromGitHub {
       owner = "zeek";
       repo = "actor-framework";
-      rev = "dbb68b4573736d7aeb69268cc73aa766c998b3dd";
-      hash = "sha256-RV2mKF3B47h/hDgK/D1UJN/ll2G5rcPkHaLVY1/C/Pg=";
+      rev = "4f580d89f35ae4d475505101623c8b022c0c6aa6";
+      hash = "sha256-8KGXg072lZiq/rC5ZuThDGRjeYvVVFBd3ea8yhUHOYY=";
     };
-    checkPhase = ''
-      runHook preCheck
-      libcaf_core/caf-core-test
-      libcaf_io/caf-io-test
-      libcaf_openssl/caf-openssl-test
-      libcaf_net/caf-net-test --not-suites='net.*'
-      runHook postCheck
-    '';
+    cmakeFlags = old.cmakeFlags ++ [
+      "-DCAF_ENABLE_TESTING=OFF"
+    ];
+    doCheck = false;
   });
 in
 stdenv.mkDerivation {
@@ -51,8 +47,8 @@ stdenv.mkDerivation {
   src = fetchFromGitHub {
     owner = "zeek";
     repo = "broker";
-    rev = "bc0205ce1fc06ddb91abb6744cb79c7eb846c23e";
-    hash = "sha256-bmyitJg3kRyIXm09IupLwZXbiGZfikkHcRcIexkS4/g=";
+    rev = "3df8d35732d51e3bd41db067260998e79e93f366";
+    hash = "sha256-37JIgbG12zd13YhfgVb4egzi80fUcZVj/s+yvsjcP7E=";
   };
   postUnpack = ''
     rmdir $sourceRoot/cmake $sourceRoot/3rdparty

pkgs/applications/networking/ids/zeek/debug-runtime-undef-fortify-source.patch

@@ -1,26 +0,0 @@
-diff --git a/auxil/spicy/spicy/hilti/runtime/CMakeLists.txt b/auxil/spicy/spicy/hilti/runtime/CMakeLists.txt
-index f154901c..76563717 100644
---- a/auxil/spicy/spicy/hilti/runtime/CMakeLists.txt
-+++ b/auxil/spicy/spicy/hilti/runtime/CMakeLists.txt
-@@ -69,7 +69,7 @@ target_compile_definitions(hilti-rt-objects PRIVATE "HILTI_RT_BUILD_TYPE_RELEASE
- # Build hilti-rt-debug with debug flags.
- string(REPLACE " " ";" cxx_flags_debug ${CMAKE_CXX_FLAGS_DEBUG})
- target_compile_options(hilti-rt-debug-objects PRIVATE ${cxx_flags_debug})
--target_compile_options(hilti-rt-debug-objects PRIVATE "-UNDEBUG;-O0;-Wall")
-+target_compile_options(hilti-rt-debug-objects PRIVATE "-UNDEBUG;-O0;-Wall;-U_FORTIFY_SOURCE")
- target_compile_definitions(hilti-rt-debug-objects PRIVATE "HILTI_RT_BUILD_TYPE_DEBUG")
- 
- add_library(hilti-rt-tests-library-dummy1 SHARED src/tests/library-dummy.cc)
-diff --git a/auxil/spicy/spicy/spicy/runtime/CMakeLists.txt b/auxil/spicy/spicy/spicy/runtime/CMakeLists.txt
-index 20e7d291..9712341f 100644
---- a/auxil/spicy/spicy/spicy/runtime/CMakeLists.txt
-+++ b/auxil/spicy/spicy/spicy/runtime/CMakeLists.txt
-@@ -48,7 +48,7 @@ target_link_libraries(spicy-rt-objects PUBLIC hilti-rt-objects)
- # Build spicy-rt-debug with debug flags.
- string(REPLACE " " ";" cxx_flags_debug ${CMAKE_CXX_FLAGS_DEBUG})
- target_compile_options(spicy-rt-debug-objects PRIVATE ${cxx_flags_debug})
--target_compile_options(spicy-rt-debug-objects PRIVATE "-UNDEBUG;-O0;-Wall")
-+target_compile_options(spicy-rt-debug-objects PRIVATE "-UNDEBUG;-O0;-Wall;-U_FORTIFY_SOURCE")
- target_compile_definitions(spicy-rt-debug-objects PRIVATE "HILTI_RT_BUILD_TYPE_DEBUG")
- target_link_libraries(spicy-rt-debug-objects PUBLIC hilti-rt-debug-objects)
- 

pkgs/applications/networking/ids/zeek/default.nix

@@ -5,7 +5,6 @@
 , cmake
 , flex
 , bison
-, spicy-parser-generator
 , openssl
 , libkqueue
 , libpcap
@@ -26,18 +25,16 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "zeek";
-  version = "5.2.2";
+  version = "6.0.1";
 
   src = fetchurl {
     url = "https://download.zeek.org/zeek-${version}.tar.gz";
-    sha256 = "sha256-4MJBV8yWpy5LvkyyipOZdDjU6FV7F8INc/zWddRGFcY=";
+    sha256 = "sha256-z8MpoXBDkZXXBw7FOH2Vzdp+trhqyF7HB7ntDp1Xaik=";
   };
 
   strictDeps = true;
 
   patches = [
-    ./avoid-broken-tests.patch
-    ./debug-runtime-undef-fortify-source.patch
     ./fix-installation.patch
   ];
 
@@ -51,7 +48,6 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     broker
-    spicy-parser-generator
     curl
     gperftools
     libmaxminddb
@@ -67,21 +63,19 @@ stdenv.mkDerivation rec {
   ];
 
   postPatch = ''
-    patchShebangs ./auxil/spicy/spicy/scripts
-
-    substituteInPlace auxil/spicy/CMakeLists.txt --replace "hilti-toolchain-tests" ""
-    substituteInPlace auxil/spicy/spicy/hilti/CMakeLists.txt --replace "hilti-toolchain-tests" ""
+    patchShebangs ./ci/collect-repo-info.py
+    patchShebangs ./auxil/spicy/scripts
   '';
 
   cmakeFlags = [
     "-DBroker_ROOT=${broker}"
-    "-DSPICY_ROOT_DIR=${spicy-parser-generator}"
     "-DENABLE_PERFTOOLS=true"
     "-DINSTALL_AUX_TOOLS=true"
     "-DZEEK_ETC_INSTALL_DIR=/etc/zeek"
     "-DZEEK_LOG_DIR=/var/log/zeek"
     "-DZEEK_STATE_DIR=/var/lib/zeek"
     "-DZEEK_SPOOL_DIR=/var/spool/zeek"
+    "-DDISABLE_JAVASCRIPT=ON"
   ] ++ lib.optionals stdenv.isLinux [
     "-DLIBKQUEUE_ROOT_DIR=${libkqueue}"
   ];

pkgs/applications/networking/ids/zeek/fix-installation.patch

@@ -1,18 +1,9 @@
-From f8c42a712db42cfd00fca75be2ce63c3aad2aad1 Mon Sep 17 00:00:00 2001
-From: Tobias Mayer <tobim@fastmail.fm>
-Date: Sun, 13 Nov 2022 21:48:36 +0100
-Subject: [PATCH] Fix installation
-
----
- CMakeLists.txt | 5 -----
- 1 file changed, 5 deletions(-)
-
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 846b65efd..d8b0be169 100644
+index 4d3da0c90..d37931c1b 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -81,11 +81,6 @@ if ( NOT ZEEK_LOG_DIR )
-     set(ZEEK_LOG_DIR ${ZEEK_ROOT_DIR}/logs)
+@@ -503,11 +503,6 @@ if (NOT MSVC)
+     set(HAVE_SUPERVISOR true)
  endif ()
  
 -install(DIRECTORY DESTINATION ${ZEEK_ETC_INSTALL_DIR})
@@ -21,8 +12,68 @@ index 846b65efd..d8b0be169 100644
 -install(DIRECTORY DESTINATION ${ZEEK_LOG_DIR})
 -
  configure_file(zeek-path-dev.in ${CMAKE_CURRENT_BINARY_DIR}/zeek-path-dev)
- execute_process(COMMAND "${CMAKE_COMMAND}" -E create_symlink
-                 "${CMAKE_CURRENT_BINARY_DIR}/zeek-wrapper.in"
--- 
-2.37.3
  
+ file(
+@@ -1198,7 +1193,7 @@ if (INSTALL_ZKG)
+                    @ONLY)
+ 
+     install(DIRECTORY DESTINATION var/lib/zkg)
+-    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/zkg-config DESTINATION ${ZEEK_ZKG_CONFIG_DIR}
++    install(FILES ${CMAKE_CURRENT_BINARY_DIR}/zkg-config DESTINATION ${CMAKE_INSTALL_PREFIX}/etc/zeek/zkg
+             RENAME config)
+ endif ()
+ 
+Submodule auxil/zeekctl contains modified content
+diff --git a/auxil/zeekctl/CMakeLists.txt b/auxil/zeekctl/CMakeLists.txt
+index 1ebe7c2..1435509 100644
+--- a/auxil/zeekctl/CMakeLists.txt
++++ b/auxil/zeekctl/CMakeLists.txt
+@@ -9,7 +9,7 @@ file(STRINGS "${CMAKE_CURRENT_SOURCE_DIR}/VERSION" VERSION LIMIT_COUNT 1)
+ set(PREFIX "${CMAKE_INSTALL_PREFIX}")
+ set(LIBDIR "${CMAKE_INSTALL_FULL_LIBDIR}")
+ set(ZEEKSCRIPTDIR "${ZEEK_SCRIPT_INSTALL_PATH}")
+-set(ETC "${ZEEK_ETC_INSTALL_DIR}")
++set(ETC "${CMAKE_INSTALL_SYSCONFDIR}")
+ 
+ ########################################################################
+ ## Dependency Configuration
+@@ -200,38 +200,9 @@ else ()
+     set(LOGS ${VAR}/logs)
+ endif ()
+ 
+-if ( BINARY_PACKAGING_MODE AND NOT APPLE )
+-    # Packaging for Apple-based systems does not need special logic
+-    # because many probably find it more convenient for uninstalling
+-    # when everything resides under a common prefix (since there's no
+-    # native package management system)
+-    set(perms OWNER_READ OWNER_WRITE OWNER_EXECUTE
+-              GROUP_READ GROUP_WRITE GROUP_EXECUTE
+-              WORLD_READ WORLD_WRITE WORLD_EXECUTE)
+-
+-    install(DIRECTORY DESTINATION ${SPOOL}
+-            DIRECTORY_PERMISSIONS ${perms})
+-    install(DIRECTORY DESTINATION ${SPOOL}/tmp
+-            DIRECTORY_PERMISSIONS ${perms})
+-    install(DIRECTORY DESTINATION ${SPOOL}/brokerstore
+-            DIRECTORY_PERMISSIONS ${perms})
+-    install(DIRECTORY DESTINATION ${LOGS}
+-            DIRECTORY_PERMISSIONS ${perms})
+-    set(EMPTY_WORLD_DIRS
+-        "${EMPTY_WORLD_DIRS} ${SPOOL} ${SPOOL}/tmp ${LOGS}"
+-        CACHE STRING "" FORCE)
+-else ()
+-    install(DIRECTORY DESTINATION ${SPOOL})
+-    install(DIRECTORY DESTINATION ${SPOOL}/tmp)
+-    install(DIRECTORY DESTINATION ${SPOOL}/brokerstore)
+-    install(DIRECTORY DESTINATION ${LOGS})
+-endif ()
+-
+ file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/zeekctl-config.sh
+      "# Automatically generated. Do not edit.\n")
+-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/zeekctl-config.sh DESTINATION ${SPOOL})
+-InstallSymlink(${SPOOL}/zeekctl-config.sh
+-               ${PREFIX}/share/zeekctl/scripts/zeekctl-config.sh)
++install(FILES ${CMAKE_CURRENT_BINARY_DIR}/zeekctl-config.sh DESTINATION ${PREFIX}/share/zeekctl/scripts)
+ 
+ # A couple of configuration options that are needed are placed in here.
+ configure_file(etc/zeekctl.cfg.in