cafkafk/nixpkgs
cafkafk/nixpkgs
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126837 commits 1 branch 0 tags 3.7 GiB
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120 commits

Author SHA1 Message Date
Renato Alves
65ea5f8857
samtools_0_1_19: init at 0.1.19 
samtools-1.5 already exists but some software requires the older version
 2018-02-02 21:49:50 +01:00
Renato Alves
b22e4976cb
muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
Alexey Shmalko
38fbc93f46
Merge pull request #34156 from arcadio/star 
star: init at 2.5.3a
 2018-01-27 17:02:16 +02:00
adisbladis
7a2d35d9db
Merge pull request #34119 from arcadio/master 
igv: 2.3.98 -> 2.4.6
 2018-01-25 18:33:49 +08:00
Samuel Leathers
efdb0983da
Merge pull request #34199 from arcadio/kallisto 
kallisto: init at 0.43.1
 2018-01-24 20:43:24 -07:00
Arcadio Rubio García
a7333e9ced kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
Arcadio Rubio García
72d675b23c star: init at 2.5.3a 2018-01-24 16:07:15 +00:00
adisbladis
266979a360
Merge pull request #34125 from arcadio/bwa 
bwa: 0.7.16a -> 0.7.17
 2018-01-23 20:12:56 +08:00
adisbladis
b0603f514b
Merge pull request #34139 from arcadio/bedtools 
bedtools: 2.26.0 -> 2.27.1
 2018-01-23 12:56:01 +08:00
adisbladis
7490d4d698
Merge pull request #34140 from arcadio/picard 
picard-tools: 2.7.1 -> 2.17.4
 2018-01-22 23:57:10 +08:00
Arcadio Rubio García
612953567d bowtie2: 2.3.3.1 -> 2.3.4 2018-01-22 12:28:06 +00:00
Arcadio Rubio García
12c5dc343f picard-tools: 2.7.1 -> 2.17.4 2018-01-22 12:16:26 +00:00
Arcadio Rubio García
c75e91a374 bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
Arcadio Rubio García
0d05bcae8c bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
Arcadio Rubio García
550e6146d4 igv: 2.3.98 -> 2.4.6 2018-01-21 21:07:44 +00:00
Ashley Gillman
245a67df8b dcm2niix: cmake is native, style 2018-01-15 16:53:28 +10:00
Ashley Gillman
271d4a7ca0 dcm2niix: init at 1.0.20170130 2018-01-15 16:45:03 +10:00
Justin Bedo
a49c91f655
snpeff: 4.3p -> 4.3t 2017-12-21 10:52:26 +11:00
Orivej Desh
1f99fd6965 libminc: fix build after hdf5 upgrade by using hdf5_1_8 2017-12-01 00:37:29 +00:00
rybern
ef0486b1f9 vcftools: init at 0.1.15 (#31339) 2017-11-16 09:52:56 +02:00
Ryan Bernstein
941014ffff bowtie2: init at 2.3.3.1 2017-10-22 00:11:49 +02:00
Orivej Desh
047c576353 Merge pull request #29963 from mimadrid/update/samtools-1.6.0 
samtools: 1.5.0 -> 1.6.0
 2017-10-02 01:07:11 +00:00
Orivej Desh
d73bd7f50a bcftools: fix up 2017-10-01 07:45:19 +00:00
Orivej Desh
09a5396982 samtools: fix up 2017-10-01 07:36:30 +00:00
mimadrid
bebccf176e
bcftools: 1.5.0 -> 1.6.0 2017-09-30 22:22:25 +02:00
mimadrid
ee2c76693e
samtools: 1.5.0 -> 1.6.0 2017-09-30 22:20:02 +02:00
Robin Gloster
7cbf3a27de freebayes: clean up build 2017-09-28 00:54:01 +02:00
Samuel Leathers
a3e2ecd7f7 freebayes: 1.1.0 -> 2017-08-23 2017-09-28 00:54:01 +02:00
Tuomas Tynkkynen
4b4bfbf3e5 darwin: Disable another bunch of packages never having built successfully 
tecoc: https://hydra.nixos.org/build/61141995
shallot: https://hydra.nixos.org/build/61145497
plink-ng: https://hydra.nixos.org/build/61130149
tshark: https://hydra.nixos.org/build/61479600
 2017-09-22 19:49:57 +03:00
Ben Darwin
c7bbe471b0 ants: bump version and fix sandboxed build 2017-09-20 18:42:34 -04:00
Robin Gloster
a0967948d9
bwa: 0.7.15 -> 0.7.16a 2017-09-05 14:42:45 +02:00
Samuel Leathers
d9cd226a6d neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
Ryan Bernstein
749e702a46 poretools: version number to commit date 2017-08-18 09:59:26 -04:00
Ryan Bernstein
a13e4ad1f5 poretools: init at 0.6.0 2017-08-17 11:17:30 -04:00
mimadrid
15a99ae367
bcftools: 1.4.0 -> 1.5.0 2017-08-13 00:17:48 +02:00
mimadrid
ca45a26ec3
samtools: 1.4.0 -> 1.5.0 2017-08-13 00:17:25 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
mimadrid
20fb18bdbc
igv: 2.3.89 -> 2.3.98 2017-08-01 20:46:31 +02:00
Shea Levy
24c59a4452 neuron: enable GUI 2017-06-28 11:59:54 -04:00
Justin Bedo
94ec54598c
snpeff: 4.3i -> 4.3p 2017-06-13 15:31:52 +10:00
Jörg Thalheim
be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4 
Update/htslib 1.4
 2017-05-11 07:08:56 +01:00
mimadrid
8d1bebf83c
bcftools: 1.3.1 -> 1.4 2017-05-11 07:04:33 +01:00
mimadrid
9073e67568
samtools: 1.3.1 -> 1.4 2017-05-07 23:15:48 +02:00
Aneesh Agrawal
bd9246b009 treewide: Always use integers for meta.priority 
Meta attributes types are now enforce as of commit
90b9719f4f,
so ensure meta.priority is always set to an integer.

This fixes evaluation of `linuxPackages_latest.virtualbox`
(the impetus for this commit)
and other packages that use lowPrio or hiPrio.
 2017-05-02 01:43:22 -04:00
Michael Raskin
7ef99bf054 Merge pull request #24085 from bcdarwin/ants 
ants: set $ANTSPATH variable in shell scripts
 2017-04-30 23:03:06 +02:00
Matthias Beyer
6239da6ade diamond: init at 0.8.36 2017-04-12 13:05:57 +02:00
Justin Bedő
c5015b77af platypus: fix platforms metadata (#24666) 2017-04-06 10:10:54 +01:00
Robin Gloster
b9948fedc6
ncbi_tools: mark as broken and remove -fPIC 
PIC is used by default since 16.09
 2017-03-30 16:23:34 +02:00
Ben Darwin
fbc9a4d7dc ants: set $ANTSPATH variable in shell scripts 2017-03-22 16:01:05 -04:00
Franz Pletz
bfb7890fa0 Merge pull request #24191 from jbedo/bedtools 
bedtools: fix clang build
 2017-03-22 15:30:19 +01:00