971 commits

Author	SHA1	Message	Date
Will Dietz	24484b216a	qalculate-gtk: 2.9.0 -> 3.0.0 ... http://qalculate.github.io/news.html	2019-03-23 01:09:17 -05:00
R. RyanTM	34cba0b001	ginac: 1.7.4 -> 1.7.5 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/ginac/versions	2019-03-21 17:54:31 -07:00
worldofpeace	0353967957	nasc: 0.5.1 -> 0.5.2 ... Main improvment is that libqalculatenasc.so is now properly linked Changelog: https://github.com/parnold-x/nasc/compare/0.5.1...0.5.2	2019-03-20 23:10:33 -04:00
Timo Kaufmann	5fc5881221	sage: backport bugfix (#57794)	2019-03-17 14:36:01 +00:00
Timo Kaufmann	8fc3c033cb	pynac: 0.7.23 -> 0.7.24 (#57791) ... Apparently some python3 related fixes: https://trac.sagemath.org/ticket/27241 Also switch to using pname.	2019-03-17 14:35:28 +00:00
Alex Branham	1e354a7e40	R: 3.5.2 -> 3.5.3 ... Closes https://github.com/NixOS/nixpkgs/pull/57400.	2019-03-14 19:50:37 +01:00
Timo Kaufmann	ce96994032	sage: fix docbuild (#57294) ... The docbuild (or rather its tests) failed because sphinx built some English parts of the documentation in Russian. The added debian patch fixes that by isolating docbuilding threads in sphinx using proper subprocesses.	2019-03-10 21:42:54 +00:00
Timo Kaufmann	3b7fb15182	Merge pull request #57126 from timokau/sage-maxima-downgrade ... sage: downgrade maxima to 5.41	2019-03-09 20:05:01 +00:00
Timo Kaufmann	23908a0ee3	sage: downgrade maxima to 5.41 ... See discussion at 82254747af.	2019-03-09 17:23:57 +01:00
luz.paz	77cb537712	gmsh: 4.1.5 -> 4.2.1	2019-03-08 05:24:15 -05:00
Timo Kaufmann	e2b287b32a	maxima: remove ecl known-failures patch ... It doesn't apply anymore since the recent update. Since the testsuite is completely disabled now, there is little point in rebasing it.	2019-03-07 16:08:10 +01:00
Jörg Thalheim	9b57d852af	Merge pull request #56905 from timokau/pari-fix ... pari: fix off-by-one error	2019-03-06 11:00:07 +00:00
Timo Kaufmann	a648b8c714	pari: fix off-by-one error ... Done by applying upstream patch. Will be included in the next release. Upstream: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2117	2019-03-05 21:50:44 +01:00
Timo Kaufmann	00fa98f012	pari: add timokau as maintainer ... I'm mostly interested in this package because it is a dependency of sage. I'd like to be notified on changes (which ofBorg will do when I'm listed as a maintainer).	2019-03-05 20:23:04 +01:00
Timo Kaufmann	5a23cb575e	pari: slight refactoring ... Use pname, one line per argument.	2019-03-05 20:21:26 +01:00
Peter Simons	1c6a193b3e	wxmaxima: update to version 19.03.0	2019-03-05 12:53:05 +01:00
Peter Simons	82254747af	maxima: update to version 5.42.2	2019-03-05 12:53:04 +01:00
R. RyanTM	6a987f5730	form: 4.2.0 -> 4.2.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/form/versions	2019-03-03 20:49:36 +01:00
Timo Kaufmann	9e3754786b	sage: fix strictDeps fallout ... See https://github.com/NixOS/nixpkgs/pull/54182 and https://github.com/NixOS/nixpkgs/pull/55757.	2019-03-03 13:25:40 +01:00
Timo Kaufmann	2de81ee78f	sage: patch for pip 19 ... pip 19 introduced a deprecation warning for python 2.7. Since sage internally uses pip to query for installed packages, this deprecation warning will show up at unexpected times. That is ugly and messes with the testsuite. Upstream: https://trac.sagemath.org/ticket/27405	2019-03-03 13:21:22 +01:00
R. RyanTM	e869b87dbb	clp: 1.16.11 -> 1.17.0 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/clp/versions	2019-03-01 16:08:32 -08:00
Frederik Rietdijk	2fcb11a244	Merge staging-next into master	2019-03-01 09:06:20 +01:00
Jörg Thalheim	dadc7eb329	treewide: use runtimeShell instead of stdenv.shell whenever possible ... Whenever we create scripts that are installed to $out, we must use runtimeShell in order to get the shell that can be executed on the machine we create the package for. This is relevant for cross-compiling. The only use case for stdenv.shell are scripts that are executed as part of the build system. Usages in checkPhase are borderline however to decrease the likelyhood of people copying the wrong examples, I decided to use runtimeShell as well.	2019-02-26 14:10:49 +00:00
Vladimír Čunát	71f4ba29a3	Merge branch 'master' into staging-next ... Hydra nixpkgs: ?compare=1506218	2019-02-22 17:51:01 +01:00
luz.paz	add7b20858	gmsh: 4.1.3 -> 4.1.5	2019-02-21 22:55:48 -05:00
Frederik Rietdijk	e2cd07b997	Merge staging-next into staging	2019-02-21 07:54:33 +01:00
Vladimír Čunát	32767d139f	Merge branch 'staging-next' ... This round is without the systemd CVE, as we don't have binaries for that yet. BTW, I just ignore darwin binaries these days, as I'd have to wait for weeks for them.	2019-02-20 09:38:45 +01:00
Michael Raskin	446520bb9b	Merge pull request #56026 from oxij/tree/move-defaults-to-package-files-half-cuda ... all-packages.nix: move defaults to package files continues^2	2019-02-19 21:54:02 +00:00
Matthew Bauer	b1bbd94bb6	Merge remote-tracking branch 'NixOS/master' into staging	2019-02-18 20:36:48 -05:00
Frederik Rietdijk	815b77cbe6	Merge master into staging-next	2019-02-18 14:18:04 +01:00
Frederik Rietdijk	4b2336ea28	python.pkgs.caffe: fix build, closes #8749	2019-02-17 10:13:22 +01:00
Vladimír Čunát	f7f1a2f54e	Merge branch 'master' into staging-next ... A mass darwin rebuild from master (#55784).	2019-02-17 08:05:24 +01:00
Gabriel Ebner	7cbc76a3e6	Merge branch 'auto-update/qalculate-gtk'	2019-02-16 17:25:47 +01:00
Frederik Rietdijk	fd48a94b62	Merge staging-next into staging	2019-02-16 09:30:46 +01:00
Frederik Rietdijk	6fe10d2779	Merge master into staging-next	2019-02-16 09:29:54 +01:00
R. RyanTM	ef405c5b67	qalculate-gtk: 2.8.2 -> 2.9.0 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions	2019-02-15 11:39:04 -08:00
Timo Kaufmann	9243e85fbc	sage: fix fetchSageDiff (#55783) ... For some reason I changed it to use `cgit`s `rawdiff` instead of `patch` in the update to sage 8.6. Probably commited that by accident, at least I can't remember the reason. Also changed the excludes filter, the leading slash prevented it from working. As a result, the cypari2 patch changed. Only didn't notice because it was cached. Fixes #55780	2019-02-14 21:48:03 +01:00
Frederik Rietdijk	a25d48cd4f	Merge master into staging	2019-02-14 11:35:50 +01:00
Jan Tojnar	606ceda352	gnome3: stop using aliases	2019-02-14 02:31:15 +01:00
Michael Raskin	8384cfe455	Merge pull request #55129 from oxij/tree/move-defaults-to-package-files ... all-packages.nix: move defaults to package files	2019-02-13 20:04:08 +00:00
Frederik Rietdijk	7257dedd7c	Merge master into staging-next	2019-02-13 12:33:29 +01:00
Timo Kaufmann	5728028916	sage: add numpy 1.16 compatibility patch ... https://trac.sagemath.org/ticket/27000	2019-02-11 21:43:56 +01:00
Timo Kaufmann	342333c0ab	sage: add compatibility for sphinx 1.8.3 (#55078) (#55560) ... Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by https://github.com/NixOS/nixpkgs/pull/54186, this needs to be done separately. (cherry picked from commit 33db01e6d9)	2019-02-11 13:18:16 +01:00
Florian Franzen	f470720aa8	Merge branch 'staging-next' into staging	2019-02-10 14:37:31 +01:00
Vladimír Čunát	d2c4b5777b	sagelib: fix missing pkgs.pkgconfig ... Again: eb3f0aef43 #54306 Apparently the derivation needs both pkgconfigs (it fails when missing either).	2019-02-09 10:36:47 +01:00
Jan Malakhovski	4bc66b1994	cntk: move defaults to package file	2019-02-03 15:32:16 +00:00
Jan Malakhovski	31aa884b7f	caffe: move defaults to package file	2019-02-03 15:32:15 +00:00
Jan Malakhovski	49148a3ea2	mxnet: move defaults to package file	2019-02-03 15:32:14 +00:00
Jan Malakhovski	88ca6dd78a	cplex: move defaults to package file	2019-02-03 15:30:47 +00:00
Jan Malakhovski	ec2452dac1	scilab: move defaults to package file	2019-02-03 15:30:45 +00:00
Timo Kaufmann	33db01e6d9	sage: add compatibility for sphinx 1.8.3 (#55078) ... Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by https://github.com/NixOS/nixpkgs/pull/54186, this needs to be done separately.	2019-02-02 13:02:07 +01:00
Vladimír Čunát	8ba516664b	Merge branch 'staging-next' into staging	2019-02-01 09:42:53 +01:00
Robert Schütz	052acfe930	sage: python-openid: move django and twill to checkInputs (#54949) ... A search through the source code (https://github.com/openid/python-openid/search?q=django and https://github.com/openid/python-openid/search?q=twill) reveals that they are only used in examples and tests.	2019-01-31 10:14:36 +01:00
markuskowa	ca13dc163b	Merge pull request #49871 from wucke13/getdp ... getdp: init at 3.0.4	2019-01-31 00:43:08 +01:00
R. RyanTM	2b03ef0521	gmsh: 4.1.0 -> 4.1.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2019-01-28 10:33:36 -08:00
wucke13	4f40b5e00e	getdp: init at 3.0.4	2019-01-28 16:45:13 +01:00
Matthew Bauer	92f0f8dd68	Merge remote-tracking branch 'NixOS/master' into staging	2019-01-27 00:01:13 -05:00
Artemis Tosini	51a2a08d6e	mathematica: 11.2.0 -> 11.3.0 ... Note that this only affects the English version, as I do not have access to the hash for the Japanese version.	2019-01-25 15:29:02 +00:00
worldofpeace	78da8d668b	pantheon: init a 5.0	2019-01-24 20:54:14 +00:00
Timo Kaufmann	d34f44db45	sage: fix transient ecl error (#54285) ... Sometimes the doctests fail because ecl races to create a directory. This should fix that by making sure each process has its own directory.	2019-01-18 23:02:03 +01:00
markuskowa	4545aaa671	Merge pull request #54209 from r-ryantm/auto-update/gmsh ... gmsh: 4.0.7 -> 4.1.0	2019-01-18 11:40:48 +01:00
R. RyanTM	55ea7b1bbe	gmsh: 4.0.7 -> 4.1.0 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2019-01-17 12:55:54 -08:00
Timo Kaufmann	e379ee67c3	sage: 8.5 -> 8.6	2019-01-17 20:39:02 +01:00
Timo Kaufmann	29e150d85f	Merge pull request #54127 from timokau/gap-improvements ... gap: install libgap, add packageSet option	2019-01-17 20:38:38 +01:00
Timo Kaufmann	cf63a8c94c	gap: add packageSet option ... Two reasons for this: - more fine-grained space/functionality tradeoff - preparation for the sage 8.6 update, which finally doesn't need a downgraded gap anymore but does break when unexpected (non-standard) packages are installed. Details: https://trac.sagemath.org/ticket/26983 The proper way to deal with gap packages would be to create a package set, package each one individually and have something like gap equivalent of `python.withPackages`. I am not willing to do that however.	2019-01-17 10:10:24 +01:00
Timo Kaufmann	bb173ec8e3	gap: install libgap ... There are some starts of a `make install`, but nothing complete yet. Upstream now ships a `libgap` as a replacement of the custom one used by sagemath.	2019-01-17 10:10:21 +01:00
Timo Kaufmann	6bbd0596dd	gap: add timokau as maintainer ... So that I'll be notified on changes which likely impact sage.	2019-01-16 23:41:31 +01:00
Timo Kaufmann	a8dbc5e313	python.pkgs.cypari2: 1.3.1 -> 2.0.3 (#54093) ... Upstream issues should be fixed now, see https://trac.sagemath.org/ticket/26442. Sage needs a patch to adapt.	2019-01-16 22:15:40 +01:00
Johannes Frankenau	bebf305c1b	gurobi: 8.0.1 -> 8.1 (#53884)	2019-01-13 23:22:55 +01:00
R. RyanTM	bd7eec5d9c	pynac: 0.7.22 -> 0.7.23 (#53559) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/pynac/versions	2019-01-07 14:52:18 +01:00
Timo Kaufmann	7abdacc4f2	Merge pull request #51039 from timokau/sage-8.5 ... sage: 8.4 -> 8.5	2018-12-29 16:15:38 +01:00
Timo Kaufmann	8cd7b5aab3	gap: 4r8p10 -> 4.10.0 (#53037) ... This new version also has a libgap replacement, so after the next sage update gap-libgap-compatible and libgap won't be necessary anymore.	2018-12-29 16:05:56 +01:00
Timo Kaufmann	22c16ed300	Merge remote-tracking branch 'upstream/master' into sage-8.5	2018-12-29 12:16:02 +01:00
Timo Kaufmann	95909d4fb6	Revert "sage: preload openblasCompat" ... This reverts commit 4900bbee17. The issue that was supposed to fix is now fixed by lazy-loading rpy2 and makign sure scipy is loaded before that. That is not quite as nice, but preloading is now causing its own issues with openblas 0.3.4: https://github.com/xianyi/OpenBLAS/issues/1936	2018-12-28 23:06:05 +01:00
Timo Kaufmann	360eddd3a3	sage: remove outdated patch files	2018-12-28 23:06:05 +01:00
Timo Kaufmann	6f0f06ec89	sage: 8.5.rc1 -> 8.5	2018-12-28 23:06:05 +01:00
Alex Branham	a5fc513079	R: 3.5.1 -> 3.5.2 ... Closes https://github.com/NixOS/nixpkgs/pull/52571.	2018-12-21 13:59:36 +01:00
Gabriel Ebner	21597583f9	Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk ... qalculate-gtk: 2.8.1 -> 2.8.2	2018-12-17 09:46:32 +01:00
Timo Kaufmann	b09967d812	sage: 8.5.rc0 -> 8.5.rc1	2018-12-16 21:33:28 +01:00
Jörg Thalheim	33c227c23b	Merge pull request #52392 from r-ryantm/auto-update/calc ... calc: 2.12.7.1 -> 2.12.7.2	2018-12-16 17:33:43 +00:00
R. RyanTM	67536060ac	calc: 2.12.7.1 -> 2.12.7.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/calc/versions	2018-12-16 07:44:09 -08:00
Michael Raskin	2f0cbb34cf	Merge pull request #52171 from r-ryantm/auto-update/pari ... pari: 2.11.0 -> 2.11.1	2018-12-15 12:08:50 +00:00
R. RyanTM	943e6fa283	pari: 2.11.0 -> 2.11.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/pari/versions	2018-12-14 22:17:15 -08:00
R. RyanTM	a7e1717d4b	qalculate-gtk: 2.8.1 -> 2.8.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions	2018-12-14 07:37:22 -08:00
luz.paz	ab9532b1fe	gmsh: 4.0.5 -> 4.0.7	2018-12-14 08:01:20 -05:00
Timo Kaufmann	90bc5ce04d	sage: 8.5.beta5 -> 8.5.beta6	2018-12-10 19:36:24 +01:00
Timo Kaufmann	f0ea741a9a	Merge pull request #51786 from symphorien/giac-1.5 ... giac: 1.4.9 -> 1.5.0	2018-12-10 13:40:03 +01:00
Symphorien Gibol	29242e472e	giac: build with nauty support	2018-12-09 23:18:58 +01:00
Symphorien Gibol	2253b3e760	nauty: also install libs	2018-12-09 23:18:53 +01:00
Symphorien Gibol	8b4f885264	giac: add missing optional dependencies	2018-12-09 23:18:53 +01:00
Symphorien Gibol	e7801461e0	giac: don't split in multiple outputs for when gui enabled ... This breaks the Phys and Turtle menu, among other things.	2018-12-09 23:18:53 +01:00
Symphorien Gibol	b5435d0551	giac: 1.4.9 -> 1.5.0	2018-12-09 23:18:46 +01:00
Frederik Rietdijk	a510aa2672	Merge master into staging-next	2018-12-03 12:18:43 +01:00
Timo Kaufmann	5f2b8de75c	Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414) ... This reverts commit d9b650f4cc. The update is causing segfaults. See https://trac.sagemath.org/ticket/26442.	2018-12-03 00:44:33 +01:00
markuskowa	506d4c7e44	Merge pull request #51329 from c0bw3b/cleanup/gnu-https ... Favor HTTPS URLs - the GNU edition	2018-12-02 16:52:33 +01:00
c0bw3b	0498ccd076	Treewide: use HTTPS on GNU domains ... HTTP -> HTTPS for : - http://gnu.org/ - http://www.gnu.org/ - http://elpa.gnu.org/ - http://lists.gnu.org/ - http://gcc.gnu.org/ - http://ftp.gnu.org/ (except in fetchurl mirrors) - http://bugs.gnu.org/	2018-12-02 15:51:59 +01:00
c0bw3b	0f868d8116	Treewide: use HTTPS on SourceForge	2018-12-02 15:33:08 +01:00
Jan Tojnar	a51a99c690	gobject-introspection: rename package ... camelCase package name was a huge inconsistency in GNOME package set.	2018-12-02 12:42:29 +01:00
Brenton Horne	10f40f3ac6	scilab-bin: adding application launchers ... Moving the desktop configuration files from opt/scilab-$ver/share/applications to share/applications, making the required changes, and moving the icons in opt/scilab-$ver/share/icons to share/icons. Moving locales, appdata and mime out of there opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and scilab-${majorVer} symlinks from bin/.	2018-12-02 17:53:40 +10:00
Brenton Horne	7041972128	scilab-bin: adding bin/scilab symlink (#51346) ... Should fix #51343, merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.	2018-12-01 23:25:40 +01:00
Timo Kaufmann	88b69a0d40	Merge pull request #51337 from timokau/sagenb-matplotlib-fix ... sage: misc fixes	2018-12-01 22:04:48 +01:00
Timo Kaufmann	0e570199de	sage: fix jmol integration	2018-12-01 21:31:29 +01:00
Timo Kaufmann	cb73495f02	sagenb: fix matplotlib path	2018-12-01 20:41:40 +01:00
Timo Kaufmann	d9b650f4cc	pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)	2018-12-01 12:57:55 +01:00
Matthew Bauer	76c7a8bac0	Merge pull request #51205 from matthewbauer/more-setup-hooks ... Add premake & imake setup hook	2018-11-29 19:36:25 -06:00
Matthew Bauer	c0a804c747	treewide: add dontUseImakeConfigure where needed ... We need to set dontUseImakeConfigure in a few places to prevent imake from overriding the default configure phase. This packages all have a configure script that needs to get run: - Xaw3d - R - tkgate - ssvnc	2018-11-28 20:14:45 -06:00
Timo Kaufmann	d6376bca6d	sage: don't test the downgraded R ... Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249. The failures look harmless and are fixed with R 3.5 which will be used in sage 8.5.	2018-11-28 22:52:15 +01:00
Timo Kaufmann	359bf7f1e3	sage: disable test timeout ... Hydra build failed due to timeout: https://hydra.nixos.org/build/84870983	2018-11-28 22:37:24 +01:00
Timo Kaufmann	4900bbee17	sage: preload openblasCompat	2018-11-28 20:44:09 +01:00
Timo Kaufmann	7ca2915a50	sage: 8.5.beta4 -> 8.5.beta5	2018-11-27 18:26:16 +01:00
Timo Kaufmann	2dd9a0ed72	Merge remote-tracking branch 'upstream/master' into sage-8.5	2018-11-27 18:25:39 +01:00
Timo Kaufmann	90cebaf828	sage: 8.5.beta3 -> 8.5.beta4	2018-11-25 19:39:18 +01:00
Timo Kaufmann	2a87caa892	sage: 8.5.beta2 -> 8.5.beta3	2018-11-25 19:39:17 +01:00
Timo Kaufmann	3370247f7f	sage: 8.5.beta1 -> 8.5.beta2	2018-11-25 19:39:17 +01:00
Timo Kaufmann	883aa99226	sage: add short tests	2018-11-25 19:39:13 +01:00
Timo Kaufmann	8e7da1b8a4	sage: 8.5.beta0 -> 8.5.beta1	2018-11-25 19:36:21 +01:00
Timo Kaufmann	6138f5d5eb	sage: 8.4 -> 8.5.beta0	2018-11-25 19:36:21 +01:00
Timo Kaufmann	2fbde72556	sage: add tkinter as matplotlib backend (#51032) ... Fixes #50959.	2018-11-25 17:38:45 +01:00
Timo Kaufmann	98c94d3d7d	sage: add jupyter notebook support ... Fixes #48544.	2018-11-25 15:54:31 +01:00
Timo Kaufmann	0c23fa9aaf	Merge pull request #50998 from timokau/sage-refactor ... Sage refactor	2018-11-24 23:59:28 +01:00
Timo Kaufmann	a0723f1285	sage: don't fix node version	2018-11-24 23:14:38 +01:00
Timo Kaufmann	e28a8ed287	sage: add some flexibility to the test runner ... Make it possible to run individual tests. This is very useful while git-bisecting.	2018-11-24 23:14:38 +01:00
Timo Kaufmann	21f9123ea6	sage: remove openblas hack ... The pc files have since been included into the openblas package.	2018-11-24 23:14:38 +01:00
Timo Kaufmann	3832ddedb9	sage: refactor	2018-11-24 23:14:33 +01:00
c0bw3b	0ea604ac1d	Treewide: use https for SourceForge	2018-11-24 19:58:03 +01:00
Timo Kaufmann	9b4a518465	sage: drop known-padics-failure patch ... The failure was not observed for a while and is probably fixed now.	2018-11-24 19:01:57 +01:00
Timo Kaufmann	ca6475b5e8	sage: drop unused patches	2018-11-24 19:01:57 +01:00
Michael Raskin	6fe39605df	polymake: init at 3.2r4	2018-11-22 12:29:14 +03:00
Frederik Rietdijk	fd26e7be2a	Merge master into staging-next	2018-11-20 11:47:26 +01:00
luzpaz	0ec2af3736	gmsh: 4.0.4 -> 4.0.5 ... Manually updated	2018-11-19 11:12:38 -05:00
Frederik Rietdijk	63c6875f26	Merge master into staging-next	2018-11-18 10:32:12 +01:00
Jörg Thalheim	131f2e93b6	sage: unpin nodePackage version	2018-11-16 21:24:25 +00:00
Renaud	650036f022	Merge pull request #50359 from jfrankenau/gurobi-java ... gurobi: install Java library files	2018-11-15 14:13:47 +01:00
Johannes Frankenau	b4e13e6257	gurobi: install Java library files	2018-11-14 19:38:18 +01:00
Renaud	7ca9d67948	Merge pull request #50102 from r-ryantm/auto-update/gp2c ... gp2c: 0.0.11 -> 0.0.11pl1	2018-11-14 16:07:49 +01:00
markuskowa	f597a88542	Merge pull request #50101 from r-ryantm/auto-update/gmsh ... gmsh: 4.0.2 -> 4.0.4	2018-11-14 12:46:48 +01:00
Markus Kowalewski	644ab709e7	gmsh: restrict platform to x86_64-linux	2018-11-14 12:33:37 +01:00
Markus Kowalewski	ced40eabfd	gmsh: use openblas instead of atlas/lapack ... * openblas is properly recognized by cmake * the cmake patch is no longer neccessary	2018-11-14 11:41:46 +01:00
Matthew Bauer	2e18ba6c5a	Merge pull request #49776 from matthewbauer/atlas-remove ... atlas: remove	2018-11-13 19:18:35 -06:00
Frederik Rietdijk	daf3297cb4	Merge master into staging-next	2018-11-12 18:59:08 +01:00
Peter Simons	22a802584f	Merge pull request #50179 from Thra11/r-without-jdk ... R: Remove jdk dependency on aarch32/64	2018-11-12 12:42:39 +01:00
Frederik Rietdijk	7863aae5b2	Merge master into staging-next	2018-11-11 08:59:44 +01:00
markuskowa	45a4adb1b3	Merge branch 'master' into atlas-remove	2018-11-11 02:22:04 +01:00
Markus Kowalewski	6533d7588d	colpack: set platform to linux	2018-11-11 02:17:49 +01:00
Tom Hall	b51018ed2e	R: Remove jdk dependency on aarch32/64 ... Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.	2018-11-10 20:53:26 +00:00
R. RyanTM	2fd0c31673	calc: 2.12.6.8 -> 2.12.7.1 (#50173) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/calc/versions	2018-11-10 15:32:06 +01:00
Gabriel Ebner	698ad2dd4d	nasc: 0.5.0 -> 0.5.1	2018-11-10 14:18:31 +01:00
Gabriel Ebner	5f2a7607fa	qalculate-gtk: 2.6.2 -> 2.8.1	2018-11-10 13:17:17 +01:00
Frederik Rietdijk	53d00c3351	Merge master into staging-next	2018-11-10 11:08:54 +01:00
R. RyanTM	f5b4eb63f3	gp2c: 0.0.11 -> 0.0.11pl1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions	2018-11-09 17:56:17 -08:00
R. RyanTM	6f2bb3c275	gmsh: 4.0.2 -> 4.0.4 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2018-11-09 17:41:49 -08:00
Timo Kaufmann	efe6322ce4	pythonPackages.networkx: 2.1 -> 2.2	2018-11-07 20:15:37 +01:00
Timo Kaufmann	72e6e792f6	sage: add fetchSageDiff utility function	2018-11-07 20:15:37 +01:00
Matthew Bauer	95373d3634	atlas: remove ... atlas is broken and can apparently be removed. Fixes #49594	2018-11-04 20:23:12 -06:00
Matthew Bauer	7f4b26681d	Merge pull request #49417 from matthewbauer/disallow-native-build-inputs ... Disallow references to nativeBuildInputs	2018-11-02 20:26:48 -05:00
Jan Tojnar	3493f44727	Merge pull request #49560 from worldofpeace/eos-third-update ... update some elementary thirdparty apps	2018-11-02 21:29:57 +01:00
worldofpeace	0a2420bccd	nasc: 0.4.7 -> 0.5.0	2018-11-02 16:01:05 -04:00
Tuomas Tynkkynen	067d1cf330	Merge remote-tracking branch 'upstream/master' into staging ... Conflicts: pkgs/applications/science/math/sage/sage-src.nix	2018-10-27 19:58:03 +03:00
Timo Kaufmann	2513747356	sage: fix attrname ... This is a minimal change mainly to make sure repology recognizes this package as sage. I plan a bit more refactoring later, but this is intentionally kept minimally invasive so that it won't break anything and can be backported to 18.09.	2018-10-27 14:18:08 +02:00
Timo Kaufmann	fbea2cd77a	arb: 2.14.0 -> 2.15.1	2018-10-27 11:27:03 +02:00
Timo Kaufmann	2ce2fcfc30	pythonPackages.cython: 0.28.5 -> 0.29 ... Needs a sage patch from https://trac.sagemath.org/ticket/25292	2018-10-24 20:05:44 +02:00
Timo Kaufmann	db75fe7313	sage: fix doctest ... The test is depending on the "py2" tag always being added. I patched that recently to make it possible to test sagedoc individually. Somehow I missed this doctest.	2018-10-22 14:52:19 +02:00
Timo Kaufmann	b39142cd1f	sage: fix dochtml tests	2018-10-21 19:17:07 +02:00
Timo Kaufmann	38c2be5ffe	sage: fix docbuild ... This is only a hotfix without really knowing the issue. See https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ	2018-10-21 14:16:06 +02:00
Timo Kaufmann	a413dedde1	Merge pull request #44527 from timokau/sage-8.4 ... [WIP] sage: 8.3 -> 8.4	2018-10-20 01:34:34 +02:00
Timo Kaufmann	7ca1c31dfa	sage: 8.4.rc1 -> 8.4	2018-10-18 09:58:36 +02:00
R. RyanTM	eeb2ee296c	gmsh: 4.0.1 -> 4.0.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2018-10-15 21:54:45 -07:00
Timo Kaufmann	f89df0b556	sage: 8.4.rc0 -> 8.4.rc1	2018-10-13 13:27:10 +02:00
Timo Kaufmann	27919e06f1	sage: 8.4.beta7 -> 8.4.rc0	2018-10-07 12:23:10 +02:00
Jörg Thalheim	5200167f12	Merge pull request #47831 from r-ryantm/auto-update/calc ... calc: 2.12.6.6 -> 2.12.6.8	2018-10-04 23:31:38 +01:00
R. RyanTM	904fd99bb4	calc: 2.12.6.6 -> 2.12.6.8 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/calc/versions	2018-10-03 16:01:08 -07:00
R. RyanTM	98092f7a67	nauty: 26r10 -> 26r11 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/nauty/versions	2018-10-03 05:54:07 -07:00
Timo Kaufmann	a13eb29485	sage: 8.4.beta6 -> 8.4.beta7	2018-10-01 17:38:20 +02:00
Timo Kaufmann	bcc066b569	Merge remote-tracking branch 'upstream/master' into sage-8.4	2018-10-01 14:20:33 +02:00
R. RyanTM	b65fbe8fcd	gmsh: 4.0.0 -> 4.0.1 (#47060) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2018-09-28 22:17:32 +02:00
Timo Kaufmann	0be6ca9e71	sage: 8.4.beta5 -> 8.4.beta6	2018-09-27 12:08:15 +02:00
Timo Kaufmann	1217882907	sage: 8.4.beta4 -> 8.4.beta5	2018-09-15 17:23:14 +02:00
Timo Kaufmann	c3f652d5a8	Merge remote-tracking branch 'upstream/master' into sage-8.4	2018-09-15 17:22:11 +02:00
Silvan Mosberger	10a412f251	almonds: update license	2018-09-09 02:04:34 +02:00
Markus Kowalewski	1cff2dd135	pynac: add license	2018-09-08 14:48:19 +02:00
Timo Kaufmann	db784d883c	sage: re-add pkg-config aliases ... Those were removed because they were added to openblas itself. There was an error with that however and it will take some time until the fix makes its way through staging. For the time being, reverting this part of 26d5d030fe will fix the sage build. This commit should be reverted once 408eacbc89 is in master.	2018-09-07 21:55:41 +02:00
Timo Kaufmann	770c5b8a69	sage: 8.4.beta3 -> 8.4.beta4	2018-09-07 20:56:37 +02:00
Timo Kaufmann	4ab832d6e7	Merge remote-tracking branch 'upstream/master' into sage-8.4	2018-09-07 20:54:09 +02:00
Timo Kaufmann	7521f2863d	sage: fix numpy and scipy integration	2018-09-07 18:36:52 +02:00
Profpatsch	3e45b61a99	lib/trivial: add a few examples of usage of assertMsg/assertOneOf	2018-09-06 18:14:27 +02:00
Daniël de Kok	590ce7d1ae	mxnet: fix library dependencies. ... - mxnet now builds the open source MKL DNN library. However, this was not included with the build. - mxnet builds its own OpenMP library, even when OpenMP is provided by the system. This leads to problems, so remove the included OpenMP implementation: https://github.com/apache/incubator-mxnet/pull/12160	2018-09-04 20:27:25 +02:00
Daniël de Kok	93a5947158	mxnet: 1.1.0 -> 1.2.1 (#46026) ... Update and fix the build: - Perl is a build-time requirement. - Fix hardcoded /bin/bash invocation.	2018-09-04 11:37:54 +02:00
Timo Kaufmann	46e653673e	sage: 8.4.beta2 -> 8.4.beta3	2018-09-02 12:42:44 +02:00
xeji	a3434cf4e5	Merge pull request #45921 from markuskowa/homepages ... Cleanup homepage links	2018-09-02 08:39:30 +02:00
Markus Kowalewski	5cf25dded7	symmetrica: update homepage	2018-09-02 01:46:25 +02:00
Markus Kowalewski	c184150a22	jags: update homepage + fix license	2018-09-02 01:46:18 +02:00
Robert Schütz	93550cbddf	Merge branch 'master' into staging-next	2018-08-31 17:32:48 +02:00
John Ericson	2c2f1e37d4	reewide: Purge all uses stdenv.system and top-level system ... It is deprecated and will be removed after 18.09.	2018-08-30 17:20:32 -04:00
Frederik Rietdijk	6038628ea5	Merge master into staging-next	2018-08-29 20:54:55 +02:00
R. RyanTM	e301589013	gmsh: 3.0.6 -> 4.0.0 (#45592) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions.	2018-08-27 16:06:28 +02:00
Frederik Rietdijk	7945295410	Merge master into staging	2018-08-27 08:21:50 +02:00
Timo Kaufmann	c614c15f93	Merge pull request #45257 from timokau/openblas-pc ... openblas: add pkg-config aliases	2018-08-26 20:13:19 +02:00
Timo Kaufmann	0e4160a3a1	pythonPackages.sympy: 1.1.1 -> 1.2	2018-08-26 19:56:44 +02:00
Timo Kaufmann	1b42a1ba1e	sage: 8.4.beta1 -> 8.4.beta2	2018-08-26 13:09:22 +02:00
Timo Kaufmann	26d5d030fe	openblas: add pkg-config aliases	2018-08-21 16:39:57 +02:00
Markus Kowalewski	a1129ef9cb	glsurf: add license	2018-08-20 21:15:16 +02:00
Markus Kowalewski	3c1819fcce	ginac: add license	2018-08-20 21:02:45 +02:00
Vladimír Čunát	cbabebcc2e	Merge branch 'master' into staging-next ... Hydra: ?compare=1473892	2018-08-17 13:45:21 +02:00
zimbatm	b7e50d52f0	caffe: add darwin support (#44616)	2018-08-16 12:46:51 +01:00
Gabriel Ebner	f207998d79	qalculate-gtk: 2.6.1 -> 2.6.2	2018-08-16 11:56:27 +02:00
Bernard Fortz	22c15abe20	cplex: init at 12.8 (#44029) ... * cplex: init at 12.8 * Removed bundled java from bin directory * Refactored * More refactoring * Added config option for releasePath * Minor cleanup	2018-08-15 19:46:09 -05:00
Timo Kaufmann	52b9217b50	sage: 8.4.beta0 -> 8.4.beta1	2018-08-16 00:17:14 +02:00
Timo Kaufmann	df97127114	Merge remote-tracking branch 'upstream/master' into sage-8.4	2018-08-15 13:51:07 +02:00
adisbladis	2937e7367f	Merge pull request #45009 from jbaum98/ratpoints-darwin ... ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support	2018-08-15 15:28:39 +08:00
Jörg Thalheim	0ee6d7e3ab	Merge pull request #45011 from jbaum98/symmetrica-darwin ... symmetrica: Add darwin support	2018-08-15 07:54:56 +02:00
Jake Waksbaum	47aa6abe96	ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support	2018-08-14 11:27:59 -04:00
Jake Waksbaum	8ae47fa81a	symmetrica: Add darwin support	2018-08-14 11:23:21 -04:00
Jake Waksbaum	be81e1e29c	gfan: Add darwin support	2018-08-14 00:16:46 -04:00
Vladimír Čunát	00df25ee57	Merge branch 'master' into staging-next ... Hydra: ?compare=1472947	2018-08-12 10:33:41 +02:00
Jake Waksbaum	3babbaaa47	palp: Add darwin support (#44829)	2018-08-09 22:28:27 +02:00
Frederik Rietdijk	d9fa74ba78	Merge master into staging	2018-08-09 18:28:15 +02:00
Timo Kaufmann	291018b34e	arb: 2.13.0 -> 2.14.0 (#44600)	2018-08-07 16:38:34 +02:00
symphorien	0ca40a51c7	gwyddion, ripser: fix derivation name (#44577)	2018-08-07 01:21:53 +02:00
Timo Kaufmann	a8b048c686	sage: 8.3 -> 8.4.beta0	2018-08-05 21:09:56 +02:00
Michael Raskin	75cb04672f	Merge pull request #44508 from timokau/cddlib-0.94j ... cddlib: 0.94i -> 0.94j	2018-08-05 19:03:47 +00:00
Timo Kaufmann	0a44ff7676	cddlib: 0.94i -> 0.94j ... cddlib was autotoolized, incorporated equivalents to the sage patches and moved to GitHub.	2018-08-05 19:02:45 +02:00
Michael Raskin	6b0234942b	Merge pull request #44501 from timokau/sage-native-pari ... sage: don't override pari	2018-08-05 15:14:00 +00:00
Timo Kaufmann	30c822189d	sage: don't override pari ... Sage assumes that pari does not use threads. However instead of disabling them at compile time, we can diable them at runtime instead. As a result, sage doesn't need its own version of pari anymore. That means less rebuilds, less complexity and easier debugging.	2018-08-05 13:48:14 +02:00
Michael Raskin	58384b1dd0	scilab-bin: 5.5.2 -> 6.0.1	2018-08-05 11:27:35 +03:00
Michael Raskin	b79dbfe482	Merge pull request #43281 from timokau/sage-8.3 ... sage: 8.2 -> 8.3	2018-08-04 13:02:06 +00:00
Timo Kaufmann	834a24e0ff	sage: don't pin ntl ... Now possible because of the lcalc c++11 patch.	2018-08-04 14:22:58 +02:00
Timo Kaufmann	e550e5d0c7	lcalc: apply c++11 patch	2018-08-04 14:22:29 +02:00
Timo Kaufmann	fa34f6d41c	sage: don't pin pari	2018-08-04 14:22:28 +02:00
Timo Kaufmann	e82c26af9b	sage: don't pin singular	2018-08-04 14:22:28 +02:00
Timo Kaufmann	289173366b	singular: backport ntl error handling patch	2018-08-04 14:22:27 +02:00
Timo Kaufmann	840b64fdb8	sage: 8.2 -> 8.3	2018-08-04 14:22:21 +02:00
Tuomas Tynkkynen	008fd5fcf5	Merge remote-tracking branch 'upstream/master' into staging	2018-08-04 15:17:42 +03:00
John Ericson	db965063b3	treewide: Make configureFlags lists	2018-08-03 17:06:03 -04:00
John Ericson	632d24f11f	scilab: Make configureFlags a list	2018-08-03 17:05:58 -04:00
Robert Schütz	ae3bbf2958	almonds: use python3	2018-08-03 18:04:46 +02:00
Johannes Frankenau	79cd841713	bcal: 1.8 -> 1.9	2018-08-03 09:08:26 +02:00
R. RyanTM	38c8be3726	gp2c: 0.0.10pl1 -> 0.0.11 (#43941) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions.	2018-07-31 00:30:21 +02:00
Timo Kaufmann	ae821e09e7	glpk: adopt error recovery patch (#44201) ... This makes it possible to use "vanilla" glpk for sage and shouldn't affect anything else.	2018-07-29 20:53:56 +02:00
Frederik Rietdijk	1fe2a0f81e	Merge pull request #44129 from timokau/pari-2.11.0 ... pari: 2.9.5 -> 2.11.0	2018-07-27 11:57:57 +02:00
Timo Kaufmann	330c501be0	pari: 2.9.5 -> 2.11.0 ... The pari update makes it necessary to disable a giac test that only fails because it directly tests the pari interface.	2018-07-26 18:42:17 +02:00
Timo Kaufmann	024c23503c	singular: 4.1.1p1 -> 4.1.1p2	2018-07-23 12:17:25 +02:00
Jörg Thalheim	218298b30f	Merge branch 'master' into unused5	2018-07-21 15:41:22 +01:00
volth	52f53c69ce	pkgs/*: remove unreferenced function arguments	2018-07-21 02:48:04 +00:00
volth	6d2857a311	[bot] treewide: remove unused 'inherit' in let blocks	2018-07-20 19:38:19 +00:00
Frederik Rietdijk	1a6af9f88e	Merge pull request #43857 from volth/unused ... [bot] treewide: remove unreferenced code	2018-07-20 21:06:32 +02:00
volth	87f5930c3f	[bot]: remove unreferenced code	2018-07-20 18:48:37 +00:00
Matthew Bauer	fddd90e9ea	Merge pull request #43538 from timokau/fetchpatch-fix ... fetchpatch: quote excludes	2018-07-19 00:35:09 -04:00
Michael Raskin	877899fdb9	Merge pull request #43679 from timokau/ntl-11.2.1 ... ntl: 9.11.0 -> 11.2.1	2018-07-18 15:08:43 +00:00
Jan Tojnar	a4443ef859	nasc: 0.4.6 → 0.4.7	2018-07-18 15:38:52 +02:00
Timo Kaufmann	cad446513e	ntl: 9.11.0 -> 11.2.1 ... ntl hasn't been updated in a while. So I'm doing that and adding myself as the maintainer. I'm also adding some options and pinning the sage dependency, since it is unfortunately not compatible with the latest ntl yet. I've also enabled the tests, since they don't take terribly long and are worth the time in my opinion.	2018-07-18 14:58:38 +02:00