Commit graph

16635 commits

Author SHA1 Message Date
Chris Hodapp
7638578342 RStudio: Optionally allow packages from custom R environment
https://nixos.org/nixpkgs/manual/#r-packages contains a method for
setting up an R environment with a specific set of libraries, and it
creates an R wrapper which points R to those libraries.

The package RStudio relies on the standard R package, which then
cannot access any of the libraries specified in a custom R
environment.  While one may easily use pkgs.rstudio.override to change
rstudio's R dependency to the custom R environment, this accomplishes
nothing because while RStudio runs the correct R wrapper it clears out
the environment variable R_LIBS_SITE - and so it is still unable to
use any of those packages.

In order to work around this problem, these changes allow the user to
optionally modify rstudio's wrapper to set environment variable
R_PROFILE_USER to an R script which sets R's .libPaths(..) to point to
the same libraries; that script is generated from R_LIBS_SITE in the R
wrapper.

By default, this change has no effect.  If R is overridden to
something else, and if useRPackages is changed from its default of
false, then the change described above is made; for instance:

{
  packageOverrides = pkgs: let self = pkgs.pkgs; in
  rec {
    rEnv = pkgs.rWrapper.override {
      packages = with self.rPackages; [
        dplyr ggplot2 e1071 rpart reshape
      ];
    };
    rstudioEnv = pkgs.rstudio.override { R = rEnv; useRPackages = true; };
  };
}
2017-01-27 18:54:50 -05:00
aszlig
61b673c1f1
gajim: Enable running test suite
This is a bit more involved, because first of all, the tests aren't
distributed in the release tarball and second the test suite currently
doesn't work but there are fixes for it that get released in the next
upstream patch, so we cherry-pick the relevant commits as patches.

We now also switch to fetching the tarball directly from their GitLab
instance, because - as mentioned - it contains the tests and also
contains the icon.index file, which we already had included as a patch
and we can now drop it.

The URLs to the cherry-picked upstream commits are the following:

1f0d7387fd
491d32a2ec
46a19733d2

All of these commits are in the gajim_0.16 branch and are thus very
likely becoming part of Gajim 0.16.7.

Signed-off-by: aszlig <aszlig@redmoonstudios.org>
Cc: @7c6f434c
2017-01-27 21:06:21 +01:00
Robin Gloster
aa686fe5c3
gnutls33: remove 2017-01-27 18:37:24 +01:00
Graham Christensen
625680c9fc Merge pull request #22203 from taku0/firefox-bin-51.0.1
firefox, firefox-bin: 50.1.0 -> 51.0.1
2017-01-27 08:58:59 -05:00
Graham Christensen
6a8aa5361e Merge pull request #22202 from taku0/thunderbird-bin-45.7.0
thunderbird, thunderbird-bin: 45.6.0 -> 45.7.0 [Critical security fix]
2017-01-27 08:57:10 -05:00
taku0
403cb72d9a thunderbird, thunderbird-bin: 45.6.0 -> 45.7.0 2017-01-27 22:26:45 +09:00
taku0
0dbe492ca9 firefox, firefox-bin: 50.1.0 -> 51.0.1 2017-01-27 22:26:27 +09:00
Moritz Ulrich
3842e825a7
rawtherapee: 4.2.1025 -> 5.0 2017-01-27 11:28:46 +01:00
Graham Christensen
2427ba2a39 Merge pull request #22157 from MP2E/obs_studio_update
obs-studio: 0.15.2 -> 17.0.1
2017-01-26 21:37:01 -05:00
Graham Christensen
9df33ad764 Merge pull request #22185 from nocoolnametom/rtv-1.14.1
rtv: 1.13.0 -> 1.14.1
2017-01-26 21:31:36 -05:00
Graham Christensen
f46c5b293b
qemu: 2.7 -> 2.8, drop 2.7 2017-01-26 20:23:40 -05:00
Tom Doggett
5a3035c587 rtv: 1.13.0 -> 1.14.1 2017-01-26 15:43:19 -08:00
Cray Elliott
2f367e0af7 discord: 0.0.13 -> 0.0.1
Despite the version number confusion, this is a new version of
discord-canary, but since the build is now public/official, the version
number has been reset and the canary suffix has been dropped.

Note that this means that the executable has been renamed from
DiscordCanary to Discord
2017-01-26 23:56:11 +01:00
Tim Steinbach
cc3426fdaf Merge pull request #22152 from NeQuissimus/atom_1_13_1
atom: 1.13.0 -> 1.13.1
2017-01-26 08:43:45 -05:00
Vladimír Čunát
d1f73b8546
Merge #22171: wireshark: 2.2.3 -> 2.2.4 2017-01-26 14:32:55 +01:00
Vladimír Čunát
a1af9cc1cf
gecko-mediaplayer: remove the dead project
It was breaking evaluation since 78fe72265.
2017-01-26 12:28:40 +01:00
Joachim F
fc6e20eded Merge pull request #22129 from mdorman/emacs-updates
Automated emacs package updates
2017-01-26 12:10:38 +01:00
Lancelot SIX
c99540d526
wireshark: 2.2.3 -> 2.2.4
This release fixes those security related issues:
- https://www.wireshark.org/security/wnpa-sec-2017-01.html
- https://www.wireshark.org/security/wnpa-sec-2017-02.html
2017-01-26 11:30:48 +01:00
Cray Elliott
2598d77968 obs-studio: 0.15.2 -> 17.0.1
upstream version scheme change, this is the equivalent of 0.17.1
2017-01-25 18:55:59 -08:00
Franz Pletz
78fe722656
gmtk: remove, source not available anymore 2017-01-26 03:52:49 +01:00
Franz Pletz
a8a5d3dcf8
clipgrab: 3.6.1 -> 3.6.2 2017-01-26 03:52:48 +01:00
Tim Steinbach
d258f054cd
atom: 1.13.0 -> 1.13.1 2017-01-25 17:22:55 -05:00
Dan Peebles
ed83ec1b65 lkl: fix impure reference to /usr/bin/env 2017-01-25 21:30:59 +00:00
Pascal Wittmann
cedca371c8
homebank: 5.1.2 -> 5.1.3 2017-01-25 22:16:26 +01:00
Kosyrev Serge
4f8b4069e5 quodlibet: rename to quodlibet, quodlibet-without-gst-plugins
The gst-plugin-less version is barely useful out of the box, so it is
the one that should be relegated to a less prominent spot in the namespace.
2017-01-25 21:33:55 +01:00
Peter Hoeg
0a4943a381 syncthing: 0.14.19 -> 0.14.21 2017-01-25 20:27:22 +01:00
Yorick van Pelt
2a939c4b21 streamlink: 0.0.2 -> 0.3.0 2017-01-25 19:12:49 +01:00
Vincent Laporte
d40b680101 coq-8.4: fix build of ssreflect and mathcomp 2017-01-25 13:14:31 +00:00
vbgl
635ac15845 Merge pull request #21879 from vbgl/coq-clean
Coq: minor refactoring
2017-01-25 14:05:38 +01:00
Graham Christensen
04ae7febc8
cvs: patch against CVE-2012-0804 (heap overflow) 2017-01-25 07:24:19 -05:00
Michael Alan Dorman
87a651f4e3 melpa-packages: 2017-01-24
Removals:
 - flycheck-google-cpplint: Removed from melpa
2017-01-25 06:54:18 -05:00
Michael Alan Dorman
46cf112619 melpa-stable-packages: 2017-01-24
Removals:
 - evil: tags disappeared in repository move, so no stable version
2017-01-25 06:52:36 -05:00
Michael Alan Dorman
aa9da623ff org-packages: 2017-01-24 2017-01-25 06:50:40 -05:00
Vincent Laporte
798a87159b Coq: propagates the findlib package
So that Coq libraries that need it can easyly use it
2017-01-25 10:29:13 +00:00
Vincent Laporte
9b949be617 coq: minor refactoring 2017-01-25 10:29:13 +00:00
Vincent Laporte
a30e8db9f0 coq: merge files 8.5.nix and 8.6.nix into default.nix 2017-01-25 10:29:13 +00:00
Graham Christensen
129e90a422 Merge pull request #22122 from peterhoeg/u/db
dropbox: 17.4.33 -> 18.4.32
2017-01-24 20:00:00 -05:00
Joachim Fasting
0501e49695
electrum: 2.7.12 -> 2.7.18
See https://github.com/spesmilo/electrum/blob/master/RELEASE-NOTES
2017-01-25 00:58:52 +01:00
Michael Raskin
30b51af27b Merge pull request #22108 from yorickvP/master
i3status: 2.10 -> 2.11
2017-01-24 21:35:11 +00:00
Michael Raskin
9977fb86a0 Merge pull request #22111 from romildo/upd.mkvtoolnix
mkvtoolnix: 9.6.0 -> 9.8.0
2017-01-24 21:34:16 +00:00
Michael Raskin
90b2621ee3 Merge pull request #22113 from romildo/upd.jwm
jwm: 1563 -> 1575
2017-01-24 21:29:57 +00:00
romildo
b56d87c962 jwm: 1563 -> 1575 2017-01-24 19:19:34 -02:00
romildo
e98aa7832c mkvtoolnix: 9.6.0 -> 9.8.0
- Update mkvtoolnix to v9.8.0
- Add a build dependency on drake, because it is not bundled with
  mkvtoolnix anymore since v9.8.0
2017-01-24 18:50:56 -02:00
Franz Pletz
c9d5e5b34b
gitlab: 8.15.4 -> 8.16.1 2017-01-24 21:29:06 +01:00
Yorick van Pelt
c91aa18070 i3status: 2.10 -> 2.11 2017-01-24 20:35:29 +01:00
Michael Raskin
ae84dc0fdd Merge pull request #22094 from romildo/upd.cbatticon
cbatticon: 1.6.4 -> 1.6.5
2017-01-24 18:08:45 +00:00
Michael Raskin
ecc42baeca Merge pull request #22090 from romildo/upd.hexchat
hexchat: 2.12.3 -> 2.12.4
2017-01-24 18:06:57 +00:00
Eelco Dolstra
b6adec130b Merge pull request #22093 from taku0/firefox-bin-51.0
firefox-bin: 50.1.0 -> 51.0
2017-01-24 15:17:54 +01:00
romildo
e8e5e640bb cbatticon: 1.6.4 -> 1.6.5 2017-01-24 11:43:11 -02:00
taku0
9c9424d316 firefox: 50.1.0 -> 51.0, firefox-esr: 45.6.0esr -> 45.7.0esr 2017-01-24 22:10:58 +09:00