Commit graph

2155 commits

Author SHA1 Message Date
Timo Kaufmann
e82c26af9b sage: don't pin singular 2018-08-04 14:22:28 +02:00
Timo Kaufmann
289173366b singular: backport ntl error handling patch 2018-08-04 14:22:27 +02:00
Timo Kaufmann
840b64fdb8 sage: 8.2 -> 8.3 2018-08-04 14:22:21 +02:00
Tuomas Tynkkynen
008fd5fcf5 Merge remote-tracking branch 'upstream/master' into staging 2018-08-04 15:17:42 +03:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
John Ericson
85a9913edd treewide: Make more complicated configureFlags lists 2018-08-03 17:06:03 -04:00
John Ericson
632d24f11f scilab: Make configureFlags a list 2018-08-03 17:05:58 -04:00
Robert Schütz
ae3bbf2958 almonds: use python3 2018-08-03 18:04:46 +02:00
Johannes Frankenau
79cd841713 bcal: 1.8 -> 1.9 2018-08-03 09:08:26 +02:00
Uli Baum
052e4baf0a somatic-sniper: disable parallel building
to fix non-deterministic failure
2018-08-03 08:27:41 +02:00
xeji
9e52696649
Merge pull request #44325 from markuskowa/molcas
openmolcas: init at 20180529
2018-08-02 10:32:04 +02:00
Markus Kowalewski
484473b184
openmolcas: init at 20180529 2018-08-02 10:18:17 +02:00
Justin Bedő
51fc0ef8d2 somatic-sniper: init 1.0.5.0 (#43403) 2018-08-01 22:11:13 +02:00
Jörg Thalheim
9cff865230
Merge pull request #44122 from bgamari/kicad-0.5
kicad: 4.0.7 -> 5.0.0
2018-07-31 15:12:27 +01:00
Jörg Thalheim
71b579f9d4 kicad: remove scripting flag for simplicity 2018-07-31 14:44:49 +01:00
Jörg Thalheim
611f0ed188 kicad: properly wrap wxPython 2018-07-31 14:37:59 +01:00
R. RyanTM
38c8be3726 gp2c: 0.0.10pl1 -> 0.0.11 (#43941)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions.
2018-07-31 00:30:21 +02:00
R. RyanTM
d7c3926352 bcftools: 1.8 -> 1.9 (#43950)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bcftools/versions.
2018-07-30 22:36:27 +02:00
Timo Kaufmann
ae821e09e7 glpk: adopt error recovery patch (#44201)
This makes it possible to use "vanilla" glpk for sage and shouldn't
affect anything else.
2018-07-29 20:53:56 +02:00
Frederik Rietdijk
e46e7f44c2
Merge staging-next into master 2018-07-29 09:13:54 +02:00
Lluís Batlle i Rossell
f54b387b63 Merge remote-tracking branch 'central/master' into viric_clean 2018-07-28 19:25:14 +02:00
Frederik Rietdijk
8db716d9f3 Merge master into staging-next 2018-07-28 12:31:35 +02:00
Frederik Rietdijk
1fe2a0f81e
Merge pull request #44129 from timokau/pari-2.11.0
pari: 2.9.5 -> 2.11.0
2018-07-27 11:57:57 +02:00
Timo Kaufmann
330c501be0 pari: 2.9.5 -> 2.11.0
The pari update makes it necessary to disable a giac test that only
fails because it directly tests the pari interface.
2018-07-26 18:42:17 +02:00
Ben Gamari
a4c932fa51 kicad: 4.0.7 -> 5.0.0 2018-07-26 12:27:27 -04:00
Frederik Rietdijk
f59e6f4037 Merge master into staging 2018-07-26 16:18:53 +02:00
Robert Schütz
daabcc3b9a spyder: use python3
Dependency pylint is no longer supported on Python 2.
2018-07-26 12:43:18 +02:00
Matthew Bauer
6d880d2d5b
Merge pull request #42149 from timjrd/openspace-rebase
openspace: init at 0.11.1
2018-07-23 11:38:06 -04:00
Timo Kaufmann
024c23503c singular: 4.1.1p1 -> 4.1.1p2 2018-07-23 12:17:25 +02:00
Lluís Batlle i Rossell
66d7126255 Take me (viric) out of most maintenance
Since years I'm not maintaining anything of the list below other
than some updates when I needed them for some reason. Other people
is doing that maintenance on my behalf so I better take me out but
for very few packages. Finally!
2018-07-22 21:50:19 +02:00
Frederik Rietdijk
f3088832df
Merge pull request #43899 from r-ryantm/auto-update/tla-toolbox
tlaplusToolbox: 1.5.6 -> 1.5.7
2018-07-22 08:44:58 +02:00
Frederik Rietdijk
5dcb1febac
Merge pull request #43913 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.9 -> 2.18.10
2018-07-22 08:42:32 +02:00
Frederik Rietdijk
935a54f300
Merge pull request #43940 from r-ryantm/auto-update/gtkwave
gtkwave: 3.3.91 -> 3.3.92
2018-07-22 08:23:25 +02:00
R. RyanTM
a7a3526f71 gtkwave: 3.3.91 -> 3.3.92
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gtkwave/versions.
2018-07-21 17:57:51 -07:00
Ricardo M. Correia
0cf09556eb
why3: 0.88.3 -> 1.0.0 2018-07-21 22:53:44 +00:00
R. RyanTM
668047ca55 picard-tools: 2.18.9 -> 2.18.10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.
2018-07-21 12:28:41 -07:00
R. RyanTM
9882d5635c tlaplusToolbox: 1.5.6 -> 1.5.7
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/tla-toolbox/versions.
2018-07-21 08:39:53 -07:00
Jörg Thalheim
218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
Sebastien Maret
9092083e9e gildas: fix architecture detection for aarch64 2018-07-21 13:21:06 +02:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth
6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk
1a6af9f88e
Merge pull request #43857 from volth/unused
[bot] treewide: remove unreferenced code
2018-07-20 21:06:32 +02:00
volth
87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Matthew Bauer
fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix
fetchpatch: quote excludes
2018-07-19 00:35:09 -04:00
Matthew Bauer
76999cc40e treewide: remove aliases in nixpkgs
This makes the command ‘nix-env -qa -f. --arg config '{skipAliases =
true;}'’ work in Nixpkgs.

Misc...

- qtikz: use libsForQt5.callPackage

  This ensures we get the right poppler.

- rewrites:

  docbook5_xsl -> docbook_xsl_ns
  docbook_xml_xslt -> docbook_xsl

diffpdf: fixup
2018-07-18 23:25:20 -04:00
Michael Raskin
877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1
ntl: 9.11.0 -> 11.2.1
2018-07-18 15:08:43 +00:00
Jan Tojnar
a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann
cad446513e ntl: 9.11.0 -> 11.2.1
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
2018-07-18 14:58:38 +02:00
Timo Kaufmann
3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski
e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
Gabriel Ebner
862e4e4fdb cvc4: fix homepage url 2018-07-16 15:58:22 +01:00
fragamus
794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy
ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann
c77d1e5b31 eclib: 20171219 -> 20180710
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
2018-07-15 14:59:28 +02:00
Johannes Frankenau
d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Mario Rodas
1c88d0c6bd z3: fix darwin build (#43526) 2018-07-14 21:49:47 +02:00
markuskowa
7f1bcb1ebf octopus: 7.2 -> 8.1 (libxc 3.0.1 -> 4.2.3) (#43484) 2018-07-14 00:37:30 +02:00
Timo Kaufmann
85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Frederik Rietdijk
d0446a5c76
Merge pull request #43436 from timokau/sage-new-flask
sage: replace flask-babel version pin by patch
2018-07-13 18:52:26 +02:00
Frederik Rietdijk
59163c9c1c
Merge pull request #43471 from r-ryantm/auto-update/igv
igv: 2.4.11 -> 2.4.13
2018-07-13 18:47:57 +02:00
Michael Raskin
9932071581
Merge pull request #43472 from r-ryantm/auto-update/golly
golly: 3.1 -> 3.2
2018-07-13 15:51:31 +00:00
Will Dietz
efdf4711d8
Merge pull request #43445 from dtzWill/fix/yices-symlink
yices: fix symlink created to match version
2018-07-13 10:11:49 -05:00
R. RyanTM
d25ec8df03 golly: 3.1 -> 3.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
2018-07-13 03:02:59 -07:00
R. RyanTM
ab535c2757 igv: 2.4.11 -> 2.4.13
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.
2018-07-13 02:49:22 -07:00
Will Dietz
f731c99e7d abc-verifier: 20160818 -> 2018-07-08
Now hosted on github.
2018-07-12 21:44:56 -05:00
Will Dietz
946a65ca5c yices: use lib.splitString, not everyone has builtins.splitVersion 2018-07-12 19:11:06 -05:00
Will Dietz
237c8f4148 yices: simplify ln command 2018-07-12 18:52:10 -05:00
Will Dietz
6ff8685057 yices: fix symlink to match version of package
To help avoid this happening again, derive the string to use
from the version directly instead of embedding it in installPhase.
2018-07-12 18:46:28 -05:00
Will Dietz
d3a595f190 libpoly: 0.1.5 -> 0.1.7 (noop), cleanup a bit to modern style 2018-07-12 17:06:57 -05:00
Timo Kaufmann
35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
Austin Seipp
54e9f7dcbe z3: move to multiple output packages
The Z3 source code is effectively compiled into two completely separate
objects: the z3 binary file, and the libz3.so library -- but the binary is not
linked against the shared library, it simply incorporates all of the object
files. The Z3 code base results in an ~25MB object on x86_64-linux. As a
result, splitting bin/ and lib/ results in a 50% reduction in closure size.

(The include/ directory is also surprisingly large at .5MB...)

This also splits the python API into a completely separate .python attribute,
as well.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-07-12 15:48:48 -05:00
Timo Kaufmann
d37c23c699 jmol: 14.29.12 -> 14.29.17 (#43429) 2018-07-12 22:31:52 +02:00
Frederik Rietdijk
04cae0e5fb
Merge pull request #43333 from r-ryantm/auto-update/libpoly
libpoly: 0.1.4 -> 0.1.5
2018-07-11 19:01:02 +02:00
R. RyanTM
40e648b7ab yices: 2.5.4 -> 2.6.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/yices/versions.
2018-07-11 08:45:45 -05:00
R. RyanTM
a89b538f0b libpoly: 0.1.4 -> 0.1.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/libpoly/versions.
2018-07-11 02:29:13 -07:00
R. RyanTM
ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
2018-07-11 00:45:08 -07:00
R. RyanTM
99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
2018-07-09 16:02:58 +02:00
R. RyanTM
6ec4be7ec5 igv: 2.4.10 -> 2.4.11 (#43003)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin/igv had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.4.11 with grep in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
- directory tree listing: https://gist.github.com/ca4cf484aab1c1590806c47c4fdde1d7
- du listing: https://gist.github.com/f7ff80a2429cf0a942195db4944659b1
2018-07-09 16:02:34 +02:00
Silvan Mosberger
8e2c3b93ba
Merge pull request #43096 from jbedo/mosdepth
mosdepth: init 0.2.3
2018-07-09 04:55:24 +02:00
Dan Peebles
1dd7bc7dfc monosat: update build to use handy new environment variable 2018-07-08 22:04:05 -04:00
Dan Peebles
0372c87481 monosat: cbaf79cf -> 2deeadef
Upstream fixed a few things I needed to work around
2018-07-08 21:57:00 -04:00
Justin Bedo
59141de608
mosdepth: init 0.2.3 2018-07-09 08:51:49 +10:00
Dan Peebles
631dd7a4e9 monosat: init at 1nx3wh34
Also includes the python and java bindings (although java is only
currently enabled on Linux)
2018-07-08 12:43:29 -04:00
R. RyanTM
cb85999b6b picard-tools: 2.18.7 -> 2.18.9 (#42967)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.9 with grep in /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9
- directory tree listing: https://gist.github.com/0972acdc51fe8a1cde470e4ab5e87993
- du listing: https://gist.github.com/6a66b6723ce4887cd108678369b87360
2018-07-06 20:24:57 +02:00
Sebastien Maret
8ae9e7ef10 gildas: apply upstream fix and restore parallel building 2018-07-06 14:02:37 +02:00
Sebastien Maret
72dc6fdf47 gildas: disable parallel building 2018-07-06 10:35:53 +02:00
John Wiegley
56afc551f2
verilator: Allow building on Darwin as well as Linux 2018-07-05 15:17:17 -07:00
Matthew Bauer
bb0febf575
Merge pull request #43079 from matthewbauer/rework-extra-pkgs
Rework stage.nix's extraPkgs
2018-07-05 18:05:57 -04:00
Matthew Bauer
c491a99362 treewide: remove callPackage_i686
This has been replaced with pkgsi686Linux.callPackage
2018-07-05 14:04:52 -04:00
Will Dietz
67986382e4
Merge pull request #43071 from dtzWill/fix/vampire-portability
vampire: portability fixes
2018-07-05 11:13:42 -05:00
Gabriel Ebner
bec83a2b9e cvc4: 1.5 -> 1.6 2018-07-05 17:57:06 +02:00
Will Dietz
7353d8396d vampire: enable parallel building 2018-07-05 10:13:40 -05:00
Will Dietz
600abbedc9 vampire: portability fixes
These have been submitted upstream,
but seconds before writing this message
so naturally no upstream response "yet" :).

Regardless of response, fetch patches
from the corresponding PR's for context
and of course hopefully they'll
be included in next version.
2018-07-05 10:13:32 -05:00
Will Dietz
8e6db30bb7 vampire: use CC/CXX from env, instead of always g++ 2018-07-05 10:11:32 -05:00
Gabriel Ebner
887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Gabriel Ebner
7c63a9cac2 eprover: 2.0 -> 2.1 2018-07-05 12:26:43 +02:00
Gabriel Ebner
57ae4e8d8e vampire: init at 4.2.2 2018-07-05 09:34:28 +02:00
R. RyanTM
5a859d9b10 stellarium: 0.18.0 -> 0.18.1 (#42949)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/stellarium/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/stellarium had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/.stellarium-wrapped had a zero exit code or showed the expected version
- 0 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 0.18.1 with grep in /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1
- directory tree listing: https://gist.github.com/dd98359fb1214ae24bd70e291c1bc33d
- du listing: https://gist.github.com/67baedda5ffc1ad0aa064239cb503c2b
2018-07-05 00:24:22 +02:00
Michael Raskin
04bd737062
Merge pull request #43026 from r-ryantm/auto-update/clingo
clingo: 5.2.2 -> 5.3.0
2018-07-04 21:01:39 +00:00
R. RyanTM
a431e4f207 clingo: 5.2.2 -> 5.3.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/clingo/versions.

Version release notes (from GitHub):
# Packages

- The easiest way to obtain Python enabled clingo packages is using [Anaconda][ana]. Packages are available in the [Potassco channel][pch]. First [install either Anaconda or Miniconda][ins] and then run: `conda install -c potassco clingo`.
- Packages for clingo are available in the Linux distributions [Debian][deb], [Ubuntu][ubu], and [Arch Linux (AUR)][aur].
- For Mac OS X, clingo packages are available in [homebrew][hbr] and [macports][mac].

# Changes

* change C API to use numeric instead of symbolic literals
  * affects assumptions and assigning/releasing externals (breaks backward compatibility)
  * added overloads to C++, python and lua API to support both numeric and symbolic version (preserves backward compatibility for most code)
* the python, C and C++ APIs now allow for customizing clingo by implementing a custom main function but reusing the rest of the application including the standard output
* add API function to detect conflicting programs
* add message logger to python and lua interface
* add support for primes in the beginning of identifiers and variable names
* add per solver registration of watches during propagator initialization
* add a directive to selectivel suppress undefined atom warnings
* add support for user defined statistics
* add _to_c functions for python API to be able to call C functions from python
* only create ground representations for requested program parts when grounding (#71)
* improve program observer (#19)
* support for binary, octal, and hexadecimal numbers (#65)
* the backend has to be opened/closed now
* release python's GIL while grounding (#82)
* TruthValue.{True,False} becomes TruthValue.{\_True,\_False} in python API
* improve API and it's documentation

[deb]: https://www.debian.org/
[ubu]: https://www.ubuntu.com/
[aur]: https://aur.archlinux.org/
[hbr]: https://brew.sh/
[mac]: https://www.macports.org/
[ana]: https://conda.io
[pch]: https://anaconda.org/potassco/clingo
[ins]: https://conda.io/docs/user-guide/install/index.html

These checks were done:

- built on NixOS
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/lpconvert passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clasp passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/reify passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/gringo passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clingo passed the binary check.
- 5 of 5 passed binary check by having a zero exit code.
- 0 of 5 passed binary check by having the new version present in output.
- found 5.3.0 with grep in /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0
- directory tree listing: https://gist.github.com/bba2eaf1d132fbdd88a2710a6030c419
- du listing: https://gist.github.com/230340bfa02557290a60cfc6d2e7e977
2018-07-04 11:23:33 -07:00
Silvan Mosberger
fac943fc81
Merge pull request #42897 from fragamus/master
add bliss package
2018-07-04 13:59:41 +02:00
Michael Gough
e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann
dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sebastien Maret
d46fde9eb1 gildas: 20180601_a -> 20180701_a 2018-07-02 17:16:25 +02:00
Sarah Brofeldt
f06ce58323
Merge pull request #42843 from fragamus/master
hmetis: init at 1.5
2018-07-02 11:40:41 +02:00
Peter Simons
cbc1a03ab8 R: update to version 3.5.1
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
2018-07-02 11:33:50 +02:00
Michael Gough
f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Michael Raskin
055a29c4a1
Merge pull request #39981 from timokau/sage-on-nixos
Sage on nixos
2018-07-01 07:37:42 +00:00
Timo Kaufmann
70ba695777 sage: replace JUPYTER_PATH patch by upstream patch
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
2018-06-30 22:30:30 +02:00
Timo Kaufmann
398dad270a sage, arb: update sage dependencies arb and pynac
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
2018-06-30 17:05:56 +02:00
Luz
f6a2869031 librepcb-unstable: 2017-12-29 -> 2018-06-28 (#42786)
* Update: 2017-12-29 -> 2018-06-28

* Update libs also to qt5.9

* Add required default font file

* Switch back to default Qt version
2018-06-30 13:56:12 +02:00
Ryan Mulligan
1d54dc6841 treewide: http -> https 2018-06-29 17:18:27 -07:00
Timo Kaufmann
17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann
424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Théo Zimmermann
314eb884ec
coq_8_8: 8.8.0 -> 8.8.1 2018-06-29 11:10:31 +02:00
Matthew Bauer
2171fc4d55
Merge pull request #42590 from TimPut/openmvsbuildfix
openmvs: build with CGAL 4.12
2018-06-28 22:33:40 -04:00
Matthew Bauer
e714f85b2f
Merge pull request #41929 from smaret/gildas
gildas: init at 201806_a
2018-06-28 22:17:07 -04:00
Matthew Bauer
574883f665
Merge pull request #42571 from iimog/hmmer
hmmer: init at 3.1b2
2018-06-28 22:00:09 -04:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
Ryan Mulligan
fce8f26af6 treewide: http -> https (#42665) 2018-06-27 22:12:57 +02:00
R. RyanTM
d4f62f651f gromacs: 2018.1 -> 2018.2 (#42504)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.bash passed the binary check.
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.zsh passed the binary check.
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.csh had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/demux.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/xplor2gmx.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion.bash had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx passed the binary check.
- 3 of 9 passed binary check by having a zero exit code.
- 0 of 9 passed binary check by having the new version present in output.
- found 2018.2 with grep in /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2
- directory tree listing: https://gist.github.com/1679f0362dfcc7299a6d5b8d9e76c14e
- du listing: https://gist.github.com/2f848bb0fe181676c17b61a9d5a94953
2018-06-27 19:02:19 +02:00
Timo Kaufmann
9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann
2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann
08a59bb10d palp: fix runtime error introduced by #28029 (#42633)
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
2018-06-27 09:42:26 +02:00
tim put
385114da68 openmvs: fix CGAL 4.12 dependency
patch executables with openMVS library path
2018-06-26 21:55:15 -06:00
Sebastien Maret
7b01e2b7d6 gildas: use internal LAPACK instead of OpenBLAS
Gildas' uv_fit task segfaults when it uses OpenBLAS. Use internal
LAPACK version instead.
2018-06-26 17:15:51 +02:00
Sebastien Maret
ba2f45c182 gildas: use the standard installPhase 2018-06-26 11:09:45 +02:00
Sebastien Maret
8603f343a3 gildas: init at 201806_a 2018-06-26 11:09:45 +02:00
tim put
a47a16a887 openmvg: 1.1 -> 1.3 2018-06-25 16:12:26 -06:00
Markus Ankenbrand
851ab7f323 hmmer: init at 3.1b2 2018-06-25 16:56:21 +02:00
xeji
c51ac5eb33
Merge pull request #42423 from ryantm/repology-problems
treewide: http -> https
2018-06-24 20:44:50 +02:00
Maximilian Bosch
8cf8c4bac2 stellarium: 0.16.1 -> 0.18.0 (#42357) 2018-06-24 20:26:58 +02:00
Matthew Justin Bauer
e09861f11f
gravit: fix eval 2018-06-23 17:35:31 -04:00
Matthew Justin Bauer
9bfd3ade2e
gravit: only build on linux 2018-06-23 17:33:25 -04:00
Ryan Mulligan
0d5eb901ad treewide: http -> https 2018-06-23 04:34:55 -07:00
R. RyanTM
b75e083c69 verilator: 3.922 -> 3.924
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/verilator/versions.

These checks were done:

- built on NixOS
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_bin passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_bin_dbg passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_coverage_bin_dbg passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator passed the binary check.
- /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_coverage passed the binary check.
- Warning: no invocation of /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924/bin/verilator_profcfunc had a zero exit code or showed the expected version
- 5 of 6 passed binary check by having a zero exit code.
- 0 of 6 passed binary check by having the new version present in output.
- found 3.924 with grep in /nix/store/gnmapahqvab762fi885bwhlfhxvpfs81-verilator-3.924
- directory tree listing: https://gist.github.com/eebd214973454154b716fc6a9556b922
- du listing: https://gist.github.com/cb78abec038b5abdae8004ea1edcefc0
2018-06-19 10:14:47 -05:00
Timothée Jourde
cb597c229b openspace: init at 0.11.1
This adds a new package: OpenSpace, an open source astrovisualization
project, and one of its dependencies: SOIL (Simple OpenGL Image
Library).

This kind of works for me, but please note that this build is not very
usable for now. This is a first attempt. Also, Linux doesn't seem to
be well supported upstream, hence the various patches (I will open an
issue upstream to discuss them).

Squashed commits:
openspace: fetch upstream glm "patch"
openspace: add missing dependency (libXxf86vm)
soil: mesa -> mesa_noglu
2018-06-19 02:59:23 +02:00
R. RyanTM
b3052440f6 picard-tools: 2.18.5 -> 2.18.7 (#41975)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.7 with grep in /nix/store/siklhy9pl9xl9cq3nlqhln038554h72g-picard-tools-2.18.7
- directory tree listing: https://gist.github.com/a49ed5f2ff312ce6180174183901e38f
- du listing: https://gist.github.com/243f4d89d2100ef27d332e3562d5f173
2018-06-18 22:41:49 +02:00
R. RyanTM
d97f7d3b89 raxml: 8.2.11 -> 8.2.12 (#41964)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/RAxML/versions.

These checks were done:

- built on NixOS
- /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12/bin/raxmlHPC-PTHREADS-SSE3 passed the binary check.
- 1 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 8.2.12 with grep in /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12
- directory tree listing: https://gist.github.com/8a2b70b299e53bfee9f18d2ab8cd5f9f
- du listing: https://gist.github.com/02803409663f19671adc6be233a327fd
2018-06-18 22:40:49 +02:00
Maximilian Bosch
0dbfa47ed1 geogebra: 5-0-444-0 -> 5-0-472-0 (#41990)
Bumped to the latest version available.

Also tested the `web.archive.org` backup to avoid broken downloads when
the tarball is removed from the official download mirror.
2018-06-17 18:04:14 +02:00
spacefrogg
0b475d300c ngspice: Fix regression due to missing X libs (#41890) 2018-06-13 13:48:15 +02:00
spacefrogg
0cc4396818 xcircuit: init at 3.9.73 (#41891) 2018-06-13 13:21:34 +02:00
Ben Gamari
f4d4f5e65a kicad-unstable: 2018-03-10 -> 2018-06-12 2018-06-12 20:15:51 -04:00
Matthew Justin Bauer
cc42186614
Merge pull request #41668 from r-ryantm/auto-update/ngspice
ngspice: 27 -> 28
2018-06-10 19:08:30 -04:00
R. RyanTM
d50e65b346 pynac: 0.7.19 -> 0.7.21 (#41662)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pynac/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.7.21 with grep in /nix/store/883yhmfc1k4vz1dd37l73v7clvnyaa3v-pynac-0.7.21
- directory tree listing: https://gist.github.com/a0f53cebb1c4cae07c81edef938ac632
- du listing: https://gist.github.com/78800724710d0766e4add7ed1847c3fc
2018-06-08 19:02:38 +02:00
Jörg Thalheim
2e26c117eb
Merge pull request #41689 from r-ryantm/auto-update/gromacs
gromacs: 2018 -> 2018.1
2018-06-08 17:17:52 +01:00
R. RyanTM
bab8aee740 gromacs: 2018 -> 2018.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC had a zero exit code or showed the expected version
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.bash passed the binary check.
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.zsh passed the binary check.
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/GMXRC.csh had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/demux.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/xplor2gmx.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion.bash had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
- /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1/bin/gmx passed the binary check.
- 3 of 9 passed binary check by having a zero exit code.
- 0 of 9 passed binary check by having the new version present in output.
- found 2018.1 with grep in /nix/store/a0ab5ixcsgcj9pzkmysfa46dydbbzsyy-gromacs-2018.1
- directory tree listing: https://gist.github.com/4d089bde03168c17ad10db514f47d339
- du listing: https://gist.github.com/5dd10f02ed60d442ec148efcf18c7661
2018-06-08 06:30:20 -07:00
R. RyanTM
8195e37c14 ngspice: 27 -> 28
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ngspice/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/7mjpw971bh37wil41hin4ssn290wr3ad-ngspice-28/bin/cmpp had a zero exit code or showed the expected version
- /nix/store/7mjpw971bh37wil41hin4ssn290wr3ad-ngspice-28/bin/ngspice passed the binary check.
- 1 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 28 with grep in /nix/store/7mjpw971bh37wil41hin4ssn290wr3ad-ngspice-28
- directory tree listing: https://gist.github.com/890c9d6d1b1aa9e86b2f4c8ddf86a36d
- du listing: https://gist.github.com/099b236d47fee839749355d18a841493
2018-06-08 02:31:16 -07:00
Matthew Justin Bauer
d6a97a524a
Merge pull request #41576 from MarcFontaine/xearth
xearth : init at 1.1
2018-06-06 21:27:09 -04:00
R. RyanTM
517d5ff6e1 cryptoverif: 1.28 -> 2.00
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cryptoverif/versions.

These checks were done:

- built on NixOS
- /nix/store/449i03imd329g3yi4gbmcbq9pv5ijpib-cryptoverif-2.00/bin/cryptoverif passed the binary check.
- 1 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.00 with grep in /nix/store/449i03imd329g3yi4gbmcbq9pv5ijpib-cryptoverif-2.00
- directory tree listing: https://gist.github.com/b4cdf4e1befb51addd9b1dc1c39d78d9
- du listing: https://gist.github.com/18190fb11f51471790dcc668635aba6a
2018-06-06 14:40:27 -05:00
R. RyanTM
ff92e43a17 gtkwave: 3.3.90 -> 3.3.91
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gtkwave/versions.

These checks were done:

- built on NixOS
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/evcd2vcd passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/fst2vcd passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vcd2fst passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/fstminer passed the binary check.
- Warning: no invocation of /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/ghwdump had a zero exit code or showed the expected version
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/lxt2miner passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/lxt2vcd passed the binary check.
- Warning: no invocation of /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/shmidcat had a zero exit code or showed the expected version
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vcd2lxt passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vcd2lxt2 passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vcd2vzt passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vzt2vcd passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vztminer passed the binary check.
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/gtkwave passed the binary check.
- Warning: no invocation of /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/twinwave had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/rtlbrowse had a zero exit code or showed the expected version
- /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91/bin/vermin passed the binary check.
- 13 of 17 passed binary check by having a zero exit code.
- 0 of 17 passed binary check by having the new version present in output.
- found 3.3.91 with grep in /nix/store/saxwlbm10w3r18rlj0svnfbrf5crwr4w-gtkwave-3.3.91
- directory tree listing: https://gist.github.com/3ce8b90b2a4e815255bced6a94d99818
- du listing: https://gist.github.com/8571bbab590243bbfadf05271e188f20
2018-06-06 14:40:12 -05:00
MarcFontaine
220d2637c1 xearth : init at 1.1 2018-06-06 14:34:00 +02:00
Will Dietz
edbebe7214 z3: 4.6.0 -> 4.7.1 2018-05-30 16:54:21 -05:00
Sarah Brofeldt
b7c524f006
Merge pull request #41178 from ryantm/simgrid
simgrid: 3.17 -> 3.19.1
2018-05-28 22:40:05 +02:00
Ben Darwin
de897bacea celf: init at 2013-07-25 (#41141) 2018-05-28 21:27:53 +02:00
Ryan Mulligan
e094cda74f simgrid: 3.17 -> 3.19.1 2018-05-28 06:01:17 -07:00
Ryan Mulligan
af9d10a91b treewide: fix derivation names 2018-05-28 05:59:57 -07:00
Frederik Rietdijk
b22cc53db1 Merge staging into master 2018-05-27 17:44:08 +02:00
R. RyanTM
e33eacbc1d picard-tools: 2.18.4 -> 2.18.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/y7q0bsph0zldfjkz4ci3f41ba5va810w-picard-tools-2.18.5/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.5 with grep in /nix/store/y7q0bsph0zldfjkz4ci3f41ba5va810w-picard-tools-2.18.5
- directory tree listing: https://gist.github.com/1938ad634fa882d94e8d28fd1625547c
- du listing: https://gist.github.com/4b51e89646327900f6ef6f2242f5d0bd
2018-05-26 10:42:37 -07:00
Jan Malakhovski
ad35019501 Merge branch 'master' into staging
Fixed conflicts:
- lib/systems/for-meta.nix: in favor of staging
- pkgs/os-specific/darwin/xcode/default.nix: in favor of master
2018-05-26 00:20:17 +00:00
Matthew Justin Bauer
98f2f08b4b
Merge pull request #41009 from matthewbauer/normalize-names
Add versions to packages missing it
2018-05-25 16:32:48 -05:00
Yegor Timoshenko
4e049b2fd4 simgrid: cleanup 2018-05-25 15:48:28 -05:00
Matthew Bauer
02297beade treewide: add version to packages
Lots of packages are missing versions in their name. This adds them
where appropriate. These were found with this command:

 $ nix-env -qa -f. | grep -v '\-[0-9A-Za-z.-_+]*$' | grep -v '^hook$'

See issue #41007.
2018-05-25 15:48:05 -05:00
Jörg Thalheim
f7650ebd5f python.pkgs.spyder: fix setup.py patch 2018-05-25 11:00:14 +01:00
Gabriel Ebner
d96cc05a60 qalculate-gtk: 2.3.0 -> 2.5.0 2018-05-24 18:19:55 +02:00
Sarah Brofeldt
6ea941d3fd gmsh: gfortran -> nativeBuildInputs (fix #40976) (#40984) 2018-05-23 17:32:43 +02:00
Dmitry Kalinkin
65c3273250 form: init at 4.2.0 (#40693) 2018-05-22 20:17:32 +02:00
Vincent Laporte
ae23bb2bcc
proverif: 1.97pl1 -> 2.00 2018-05-22 06:58:10 +00:00
R. RyanTM
b34f0a11dc pari: 2.9.4 -> 2.9.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pari/versions.

These checks were done:

- built on NixOS
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/tex2mail passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gphelp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp-2.9 passed the binary check.
- 4 of 4 passed binary check by having a zero exit code.
- 0 of 4 passed binary check by having the new version present in output.
- found 2.9.5 with grep in /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5
- directory tree listing: https://gist.github.com/63c5da24ace1d863b434a462fc0d0123
- du listing: https://gist.github.com/d275cd2f3b274f52576dbab1bf9ebc9c
2018-05-21 08:53:00 +00:00
R. RyanTM
364f922cbf gtkwave: 3.3.89 -> 3.3.90
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gtkwave/versions.

These checks were done:

- built on NixOS
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/evcd2vcd passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/fst2vcd passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vcd2fst passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/fstminer passed the binary check.
- Warning: no invocation of /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/ghwdump had a zero exit code or showed the expected version
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/lxt2miner passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/lxt2vcd passed the binary check.
- Warning: no invocation of /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/shmidcat had a zero exit code or showed the expected version
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vcd2lxt passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vcd2lxt2 passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vcd2vzt passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vzt2vcd passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vztminer passed the binary check.
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/gtkwave passed the binary check.
- Warning: no invocation of /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/twinwave had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/rtlbrowse had a zero exit code or showed the expected version
- /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90/bin/vermin passed the binary check.
- 13 of 17 passed binary check by having a zero exit code.
- 0 of 17 passed binary check by having the new version present in output.
- found 3.3.90 with grep in /nix/store/hhpifj7x2j4nr80kiksdhqyfny1hlyvh-gtkwave-3.3.90
- directory tree listing: https://gist.github.com/cf30f5f6dd398a3083156aed84f02f36
- du listing: https://gist.github.com/6d77f0a1fdfe06cfe325c3873fdfd97c
2018-05-18 08:59:50 -05:00
Pascal Wittmann
97ab2d40cb
Merge pull request #40614 from symphorien/ries
ries: init at 2018-04-11
2018-05-17 21:30:47 +02:00
Symphorien Gibol
ea7404dcd7 ries: init at 2018-04-11 2018-05-17 14:09:33 +02:00
R. RyanTM
de49ba6c3f nauty: 26r7 -> 26r10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/nauty/versions.

These checks were done:

- built on NixOS
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dreadnaut passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/copyg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/listg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/labelg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/amtog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/geng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/complg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/showg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/NRswitchg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/biplabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/addedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/deledgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/countg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/pickg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genrang passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/newedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/catg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/directg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentreeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genquarticg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/ranlabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/multig passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/planarg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentourng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/linegraphg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/watercluster2 had a zero exit code or showed the expected version
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretodot passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/subdivideg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/vcolg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/delptg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/cubhamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/twohamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/hamheuristic passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/converseg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genspecialg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbgL passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/shortg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/configure had a zero exit code or showed the expected version
- 38 of 40 passed binary check by having a zero exit code.
- 0 of 40 passed binary check by having the new version present in output.
- directory tree listing: https://gist.github.com/3bca602211d416ba58097f4f8880b6d0
- du listing: https://gist.github.com/4ac19efe14e18aae8fece0ec1a500bf1
2018-05-17 03:57:50 -07:00
Matthew Bauer
e0d6edddd7 pspp: provide default icons & settings
psppire needs to be wrapped so that it will work outside of GNOME
desktop. We provide hicolor-icon-theme & gsettings-desktop-schemas.

Note that at runtime, I still get this error:

- Cannot create a converter for `IBM864' to `UTF-8': Invalid argument

Possibly a locale issue.

Fixes #40558
2018-05-15 15:42:13 -05:00
Arcadio Rubio García
699fa7e953 star: 2.5.3a -> 2.6.0c (#40518) 2018-05-15 15:09:06 +02:00
Arcadio Rubio García
e4a2b70f91 minimap2: init at 2.10 2018-05-14 21:26:07 +01:00
Timo Kaufmann
053d1e0339 giac: re-add lapack without atlas (#40 (#40458)
giac: re-add lapack without atlas
2018-05-14 12:47:45 +02:00
Gabriel Ebner
0db951db83 elan: 0.3.2 -> 0.5.0 2018-05-14 09:40:13 +02:00
Timo Kaufmann
5550015b20 giac: remove liblapackWithAtlas dependency (#40430) 2018-05-13 18:33:51 +02:00
Maximilian Bosch
be53a0f2ef sasview: fix build (#40433)
The package breaks currently breaks with the following message:

```
fixed-output derivation produced path '/nix/store/5dh1mdj027ad8sprk12fqa5h5bpdxs5n-sasview' with sha256 hash '12k1w4yq1mzjxcp2cqb562c7cbwzhi54rsbmgi0fax0i1660q167' instead of the expected hash '05la54wwzzlkhmj8vkr0bvzagyib6z6mgwqbddzjs5y1wd48vpcx'
```

To fix the build the following changes were applied:

* Switched to latest master for now as the older releases have a broken
  `py.test` configuration and altering hashes.

* Added `checkPhase` which invokes `py.test` directly and drops
  duplicated files from `dist/tmpbuild`.

* Rebased the patches `pyparsing-fix.patch` and `local_config.patch` for
  the latest master revision.

Additionally refer to the discussion in #40381 for further reference.
2018-05-13 17:25:18 +02:00
R. RyanTM
47c672b4b1 picard-tools: 2.18.3 -> 2.18.4
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.4 with grep in /nix/store/k62ym9i08d0w9sgmdjjfyy4lf2n9ig7p-picard-tools-2.18.4
- directory tree listing: https://gist.github.com/4d9e3062e701681d9b53033dc9511663
2018-05-12 13:58:09 +02:00
John Ericson
ae429f8e55 yacas: 1.2.2 -> 1.6.1
They switched to cmake and talk about mingw cross, so I can kill
crossAttrs too.
2018-05-10 11:42:08 -04:00
Austin Seipp
04002e2b71 tamarin-prover: 1.3.1 -> 1.4.0
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-05-07 11:17:49 -05:00
Jörg Thalheim
d1ad5bf95d
Merge pull request #40113 from wchresta/tamarin/fix
tamarin-prover: Fix compile issues
2018-05-07 13:49:50 +01:00
Wanja Chresta
ee95ed11ca tamarin-prover: Fix compile issues 2018-05-07 12:18:06 +02:00
Gabriel Ebner
5347d89420
Merge pull request #40093 from r-ryantm/auto-update/lean
lean: 3.3.0 -> 3.4.1
2018-05-07 11:31:23 +02:00
R. RyanTM
639376aff6 lean: 3.3.0 -> 3.4.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/lean/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/lean -h’ got 0 exit code
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/lean --help’ got 0 exit code
- ran ‘/nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1/bin/leanpkg help’ got 0 exit code
- found 3.4.1 with grep in /nix/store/kdbjdracd2m6fv18k9kc5bcmr0p60glx-lean-3.4.1
- directory tree listing: https://gist.github.com/198504c00746718749b3019653fe78fd
2018-05-07 02:24:49 -07:00
Matthew Justin Bauer
4f08e5902f
Merge pull request #39972 from ikervagyok/mathematica
mathematica: add mesa, fix `libGL.so.1 not found` messages
2018-05-05 00:07:23 -05:00
Matthew Justin Bauer
a733bbfb07
Merge pull request #39740 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.2 -> 2.18.3
2018-05-04 17:21:50 -05:00
Lengyel Balazs
1f1e16af73 mathematica: add mesa, fix libGL.so.1 not found messages 2018-05-04 13:10:26 +02:00
Austin Seipp
301f14e993 symbiyosys: 2018.03.21 -> 2018.05.03
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-05-03 20:06:20 -05:00
Matthew Justin Bauer
b45ef79b74
Merge pull request #39907 from matthewbauer/work
Miscellaneous cleanups
2018-05-03 13:33:42 -05:00
Matthew Bauer
143978a477 treewide: remove platform assertions
linux: readd assertion
2018-05-03 13:09:20 -05:00
R. RyanTM
ef01f17c2d paml: 4.9g -> 4.9h
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/paml/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 -h’ got 0 exit code
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 --help’ got 0 exit code
- ran ‘/nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h/bin/chi2 help’ got 0 exit code
- found 4.9h with grep in /nix/store/39cfy96430yznv6h3cg7zd8850i6kdl1-paml-4.9h
- directory tree listing: https://gist.github.com/b2a37e7cd2b4b41178f0698f3aac69e2
2018-05-03 15:13:15 +02:00
Matthew Justin Bauer
5e6f1abfd3
Merge pull request #39790 from matthewbauer/gnu-on-darwin
GNUs on Darwin
2018-05-01 13:56:54 -05:00
Matthew Justin Bauer
63666bf1d5
Merge pull request #37855 from Mounium/chem3
jmol init, pymol -> 2.1.0 and tidied up all-packages.nix
2018-05-01 11:01:21 -05:00
Matthew Justin Bauer
ea458f3bd7
Merge pull request #39630 from bcdarwin/conglomerate
conglomerate: init at 2017-09-10
2018-05-01 10:31:44 -05:00
Matthew Justin Bauer
278f59af49
Merge pull request #39586 from MatrixAI/labelImg
labelImg: init at 1.6.0
2018-05-01 10:24:18 -05:00
Matthew Bauer
57a4db2449 pspp: supports darwin 2018-05-01 00:45:05 -05:00
Will Dietz
4b7b083bcb treewide: stdenv.lib.platforms.gnu -> ... gnu ++ linux
Include all linux platforms.
2018-04-30 18:12:10 -05:00
R. RyanTM
4ea3841d7f picard-tools: 2.18.2 -> 2.18.3
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.3 with grep in /nix/store/q67hqz7716nf3c4f8rjmlpf2dqbb06rz-picard-tools-2.18.3
- directory tree listing: https://gist.github.com/6b71ce718f18ef6a48c05457cd0e583b
2018-04-30 11:43:21 -07:00
Jörg Thalheim
68e75fbb53
Merge pull request #39577 from veprbl/pr/pythia_8.235
pythia: 8.226 -> 8.235, enable lhapdf6 plugin
2018-04-28 11:44:37 +01:00
Ben Darwin
fa850e8fda conglomerate: init at 2017-09-10 2018-04-27 18:57:17 -04:00
Matthew Justin Bauer
914cc793e1
Merge pull request #39119 from veprbl/pr/sherpa_2.2.5
sherpa: 2.2.4 -> 2.2.5
2018-04-27 15:01:45 -05:00
Roger Qiu
ff3b88713c labelImg: init at 1.6.0 2018-04-27 12:01:24 +10:00
Dmitry Kalinkin
2f47c93ec8
sacrifice: set LD_LIBRARY_PATH for pythia plugins to work 2018-04-26 18:19:14 -04:00
Jörg Thalheim
838db3b85d
Merge pull request #39529 from r-ryantm/auto-update/ott
ott: 0.27 -> 0.28
2018-04-26 09:14:36 +01:00
R. RyanTM
769093b867 ott: 0.27 -> 0.28
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ott/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott --help’ got 0 exit code
- ran ‘/nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28/bin/ott.opt --help’ got 0 exit code
- found 0.28 with grep in /nix/store/2lbl8zpp2lrrh9pgh2gnyhimq6i86rl1-ott-0.28
- directory tree listing: https://gist.github.com/177f63b8c23bae6301ced29fb0e617c4
2018-04-26 00:52:29 -07:00
Michiel Derhaeg
189a4f3656 verifast: 14.5 -> 18.02 (#39480) 2018-04-25 22:54:57 +01:00
Jörg Thalheim
18da50d8d3
Merge pull request #39503 from veprbl/pr/sacrifice_darwin_fix
sacrifice: fix runtime on darwin
2018-04-25 22:22:19 +01:00
Katona László
329d1ba69a jmol: made it runnable 2018-04-25 22:42:07 +02:00
Katona László
75d8c81868 pymol: 1.8.4 -> 2.1.0 2018-04-25 22:15:51 +02:00
Dmitry Kalinkin
c1f45f76ad
sacrifice: fix runtime on darwin 2018-04-25 14:58:23 -04:00
Lancelot SIX
8d58b1a0a0
Merge pull request #39360 from lsix/update_motu
motuclient: 1.4.00 -> 1.5.00
2018-04-25 11:46:19 +02:00
Michael Raskin
1f909a8dfc
Merge pull request #39403 from timokau/maxima-exl-testfailures-2
maxima-ecl: Disable more failing tests
2018-04-24 15:44:04 +00:00
Matthew Justin Bauer
d57e6466e0
Merge pull request #39377 from timokau/pari-pthread
pari: Make pthread optional, remove unstable
2018-04-24 10:03:01 -05:00
Timo Kaufmann
396b5d9c65 maxima-ecl: Disable more failing tests 2018-04-24 13:38:44 +02:00
Timo Kaufmann
75b0866d0c pari: Make pthread optional, remove unstable 2018-04-24 12:54:59 +02:00
Michael Raskin
bc6f7a9ccf
Merge pull request #39370 from timokau/singular-ntl
singular: Fix ntl dependency
2018-04-24 10:54:23 +00:00
Timo Kaufmann
ba389086de singular: Fix ntl dependency 2018-04-24 12:04:28 +02:00
Timo Kaufmann
b707c91814 maxima-ecl: Disable failing tests 2018-04-24 11:16:55 +02:00
Peter Simons
6799fcb42b R: 3.4.4 -> 3.5.0
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
2018-04-24 09:19:13 +02:00
Matthew Justin Bauer
a02d6c99af
Merge pull request #34014 from mnacamura/mathematica-l10n
mathematica: enable installation of localized editions
2018-04-23 11:58:34 -05:00
Lancelot SIX
9b5793790e
motuclient: 1.4.00 -> 1.5.00 2018-04-23 10:50:45 +02:00
Jörg Thalheim
c7d278ad07
Merge pull request #39351 from matthewbauer/calc-on-darwin
calc: cleanup expression
2018-04-23 08:07:13 +01:00
Matthew Bauer
63507ada7d calc: cleanup expression
Fixes #39321

(Still needs testing on Linux)
2018-04-22 19:01:25 -05:00
Joachim F
36d58a2cd2
Merge pull request #39332 from markuskowa/octopus-up
octopus: 7.2 -> 7.3
2018-04-22 17:47:26 +00:00
Markus Kowalewski
1d0267b2e7
octopus: 7.2 -> 7.3 2018-04-22 08:43:19 -07:00
Timo Kaufmann
b93e1fbbfb jmol: init at 14.29.12 2018-04-21 20:41:21 -05:00
Timo Kaufmann
be0b8f2cf6 palp: init at 2.1 2018-04-21 20:40:59 -05:00
Timo Kaufmann
7dc6b2e3c3 pynac: init at 0.7.19 2018-04-21 20:40:22 -05:00
Jörg Thalheim
f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim
39e94277ba
Merge pull request #39197 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.1 -> 2.18.2
2018-04-21 19:21:15 +01:00
Matthew Justin Bauer
0d8e415d6b
Merge pull request #38969 from vbgl/coq-findlib
coq: fix installation of OCaml libraries
2018-04-20 18:02:52 -05:00
R. RyanTM
7d22bbe671 picard-tools: 2.18.1 -> 2.18.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.2 with grep in /nix/store/sp6gc6c6knpvpsmfdx8074qclcsgs931-picard-tools-2.18.2
- directory tree listing: https://gist.github.com/114857d15222eccda94501b5a871fb24
2018-04-20 00:44:45 -07:00
xeji
b3d50c7afa shogun: disable paralllel building
... to avoid sporadic failures
2018-04-19 12:27:00 -05:00
Matthew Justin Bauer
1bb28f26e8
Merge pull request #38810 from timokau/giac-improvements
giac: enable checks, separate outputs
2018-04-19 12:03:53 -05:00
Timo Kaufmann
ddb7c0e930 lrcalc: init at 1.2 (#38755) 2018-04-19 08:42:06 +02:00
Matthew Justin Bauer
853529b2ea
Merge pull request #38740 from r-ryantm/auto-update/cytoscape
cytoscape: 3.6.0 -> 3.6.1
2018-04-18 22:20:04 -05:00
Dmitry Kalinkin
3b69e6ef1a
sherpa: 2.2.4 -> 2.2.5 2018-04-18 15:34:23 -04:00
Vincent Laporte
76a43d765c coq: 8.8+beta1 -> 8.8.0 2018-04-18 14:37:04 +02:00
Matthew Justin Bauer
88098d58f2
Merge pull request #38701 from r-ryantm/auto-update/samtools
samtools: 1.7 -> 1.8
2018-04-17 12:03:42 -05:00
Matthew Justin Bauer
1ec5b0389d
Merge pull request #36582 from ryantm/auto-update/gromacs
gromacs: 4.6.7 -> 2018
2018-04-17 10:38:06 -05:00
Jörg Thalheim
5dc7a70f65
Merge pull request #38589 from badi/tlatools
Add TLAPS and TLA+ Toolbox
2018-04-17 14:51:35 +01:00
Vladimír Čunát
db071c4d1d
Merge #38702: Mark packages as broken (ZHF) 2018-04-17 13:36:20 +02:00
Badi Abdul-Wahid
c4ef846c92
tlaplusToolbox: init at 1.5.6 2018-04-16 22:18:47 -04:00
Badi Abdul-Wahid
d14a476054
tlaps: init at 1.4.3 2018-04-16 21:18:42 -04:00
Vincent Laporte
dc4a8435f0
symbiyosys: larger meta.platforms 2018-04-16 11:47:48 +00:00
Jan Tojnar
cee2c50748
celestia: clean up 2018-04-15 17:21:23 +02:00
Vincent Laporte
caec7dbb9f
coq: fix installation of OCaml libraries 2018-04-15 11:24:17 +00:00