cafkafk/nixpkgs
cafkafk/nixpkgs
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414919 commits 1 branch 0 tags 3.7 GiB
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812 commits

Author SHA1 Message Date
R. Ryantm
ddf9f1800a delly: 1.1.3 -> 1.1.5 2022-09-27 11:26:09 +00:00
Justin Bedő
d21b5ac044
Merge pull request #192211 from r-ryantm/auto-update/last 
last: 1409 -> 1411
 2022-09-26 11:49:30 +10:00
Brad Langhorst
2beb26b45b seqtk: init at 1.3 
Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
 2022-09-25 19:55:58 -04:00
R. Ryantm
1008651931 last: 1409 -> 1411 2022-09-21 08:24:01 +00:00
Christian Kögler
e06e88d003
Merge pull request #189923 from r-ryantm/auto-update/igv 
igv: 2.14.0 -> 2.14.1
 2022-09-18 15:59:16 +02:00
R. Ryantm
9da745bfaf messer-slim: 4.0 -> 4.0.1 2022-09-15 22:25:51 +00:00
Sandro
785031e430
Merge pull request #185819 from apraga/gatk-4.2.6.1 2022-09-10 21:31:42 +02:00
natsukium
9e65d09e3d
mafft: 7.505 -> 7.508 
changed to fetch from new gitlab repository
 2022-09-09 13:26:38 +09:00
R. Ryantm
c7832514ef igv: 2.14.0 -> 2.14.1 2022-09-05 22:29:15 +00:00
Sandro
ef987a9604
Merge pull request #189329 from bcdarwin/itk4-removal 2022-09-05 16:05:51 +02:00
Sandro
73bf7a0ca0
Merge pull request #181954 from bzizou/treemix 2022-09-05 15:57:48 +02:00
Bruno Bzeznik
7c09cfdc1a treemix: init at 1.13 2022-09-05 06:55:03 +02:00
Jonas Heinrich
eb3d3b2e90
Merge pull request #175449 from bzizou/iqtree 
iqtree: init at 2.2.0.4
 2022-09-04 23:58:04 +02:00
Ben Darwin
1280129aab EZminc: itk4 -> itk (formally; package is broken) 2022-09-04 13:36:24 -04:00
Ben Darwin
961b308fe1 ants: 2.2.0 -> 2.4.1 2022-09-04 13:36:24 -04:00
Alexis Praga
95da303902 gatk : init at 4.2.6.1 
GATK is the industry standard for genetics analysis, more precisely for
identifying SNPs and indels in germline DNA and RNAseq data .
This package does not ship the Spark version.

Apply suggestions from code review
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-09-04 15:34:30 +02:00
Jonas Heinrich
3b3a01e3f9
Merge pull request #188785 from jbedo/last 
last: 1406 -> 1409
 2022-09-04 12:40:30 +02:00
Justin Bedo
d9acf90371
last: 1406 -> 1409 2022-09-04 10:36:01 +10:00
Sandro
9b214e6dad
Merge pull request #177830 from r-ryantm/auto-update/eggnog-mapper 2022-09-03 22:43:11 +02:00
Jonas Heinrich
ed227dc9fb
Merge pull request #168109 from r-ryantm/auto-update/bcftools 
bcftools: 1.15 -> 1.16
 2022-08-27 08:51:34 +02:00
Jonas Heinrich
21ba29f226
Merge pull request #181338 from thyol/diamond 
diamond: 0.8.36 -> 2.0.15
 2022-08-25 15:25:03 +02:00
Jonas Heinrich
b8e0c9b652
Merge pull request #183253 from r-ryantm/auto-update/angsd 
angsd: 0.937 -> 0.938
 2022-08-24 10:35:05 +02:00
Jonas Heinrich
c199cfabff
Merge pull request #184694 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.15.4 -> 3.15.5
 2022-08-23 20:21:42 +02:00
Jonas Heinrich
5cb64f6046
Merge pull request #186958 from r-ryantm/auto-update/igv 
igv: 2.13.2 -> 2.14.0
 2022-08-21 21:11:49 +02:00
R. Ryantm
49f4071f30 eggnog-mapper: 2.1.7 -> 2.1.9 2022-08-21 12:45:21 +00:00
Jonas Heinrich
8508d5decf
Merge pull request #183724 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.11 -> 2.27.4
 2022-08-21 10:03:42 +02:00
R. Ryantm
98d1f4c35d bcftools: 1.15 -> 1.16 2022-08-18 18:44:42 +00:00
R. Ryantm
f4c3ff2d7f igv: 2.13.2 -> 2.14.0 2022-08-16 13:24:02 +00:00
R. Ryantm
c37112d2d0 messer-slim: 3.7.1 -> 4.0 2022-08-14 14:11:37 +00:00
Mario Rodas
0cab4c8f8a
Merge pull request #183012 from bcdarwin/update-mni-autoreg 
mni_autoreg: unstable-2017-09-22 -> unstable-2022-05-20
 2022-08-13 01:05:26 -05:00
Mario Rodas
6aeb44c32e
Merge pull request #185211 from r-ryantm/auto-update/delly 
delly: 1.0.3 -> 1.1.3
 2022-08-13 00:41:48 -05:00
kilianar
0442ab82e0 igv: 2.8.13 -> 2.13.2 
- https://software.broadinstitute.org/software/igv/2.9.x
- https://software.broadinstitute.org/software/igv/2.10.x
- https://software.broadinstitute.org/software/igv/2.11.x
- https://software.broadinstitute.org/software/igv/2.12.x
- https://software.broadinstitute.org/software/igv/2.13.x
 2022-08-07 17:53:06 +02:00
Bobby Rong
934c6c9a95
Merge pull request #184334 from r-ryantm/auto-update/mafft 
mafft: 7.490 -> 7.505
 2022-08-07 16:18:05 +08:00
R. Ryantm
8b7c09d0e6 delly: 1.0.3 -> 1.1.3 2022-08-05 08:58:15 +00:00
Sandro
e9984bc607
Merge pull request #182705 from luispedro/no_test_samtools_on_cross_compile 2022-08-02 23:20:38 +02:00
Luis Pedro Coelho
5877d8e072 samtools: Fix cross-compilation 
Tests require bgzip which comes from the htslib package.

This did not cause problems prior to
41485e7337 as tests were not run in
cross-compilation.
 2022-08-02 17:52:50 +02:00
Sandro
e76aa82431
Merge pull request #184598 from wegank/treewide-fix-platforms 2022-08-02 15:57:56 +02:00
R. Ryantm
921b81745d SPAdes: 3.15.4 -> 3.15.5 2022-08-02 02:26:56 +00:00
Weijia Wang
278086eddb treewide: fix platforms 2022-08-01 18:33:27 +02:00
R. Ryantm
b2bbba02ba mafft: 7.490 -> 7.505 2022-07-31 20:32:57 +00:00
R. Ryantm
e0a9011556 last: 1268 -> 1406 2022-07-31 16:58:20 +00:00
R. Ryantm
9338d8c9b7 picard-tools: 2.26.11 -> 2.27.4 2022-07-29 16:12:10 +00:00
R. Ryantm
8c0e56fc14 angsd: 0.937 -> 0.938 2022-07-28 07:50:11 +00:00
Justin Bedő
9e80da74b0
Merge pull request #182028 from jbedo/bedops 
bedops: 2.4.40 -> 2.4.41
 2022-07-28 09:14:23 +10:00
Ben Darwin
125da19866 mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20 2022-07-26 16:03:12 -04:00
natsukium
cf0dc604a6
dssp: init at 4.0.5 2022-07-19 12:17:34 +09:00
Justin Bedo
99fb9abfaa
bedops: 2.4.40 -> 2.4.41 2022-07-19 09:09:52 +10:00
Lassulus
01853c3bcc
Merge pull request #174547 from r-ryantm/auto-update/delly 
delly: 0.9.1 -> 1.0.3
 2022-07-16 10:49:50 +02:00
Pascal Wittmann
26ddf3454a
Merge pull request #138255 from natsukium/mafft/init 
mafft: init at 7.487
 2022-07-16 00:54:59 +02:00
thyol
0d6e3afdba diamond: update metadata 2022-07-13 12:33:33 +02:00