{ stdenv , fetchFromGitHub , zlib , pkgs , mpi ? false }: stdenv.mkDerivation rec { pname = "RAxML"; version = "8.2.12"; name = "${pname}-${version}"; src = fetchFromGitHub { owner = "stamatak"; repo = "standard-${pname}"; rev = "v${version}"; sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh"; }; buildInputs = if mpi then [ pkgs.openmpi ] else []; # TODO darwin, AVX and AVX2 makefile targets buildPhase = if mpi then '' make -f Makefile.MPI.gcc '' else '' make -f Makefile.SSE3.PTHREADS.gcc ''; installPhase = if mpi then '' mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin '' else '' mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin ''; meta = with stdenv.lib; { description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies"; license = licenses.gpl3; homepage = https://sco.h-its.org/exelixis/web/software/raxml/; maintainers = [ maintainers.unode ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; }