93 lines
1.6 KiB
Nix
93 lines
1.6 KiB
Nix
{ lib
|
|
, buildPythonPackage
|
|
, fetchPypi
|
|
, pythonAtLeast
|
|
, pythonOlder
|
|
, hatchling
|
|
, hatch-vcs
|
|
, numpy
|
|
, packaging
|
|
, importlib-resources
|
|
, pydicom
|
|
, pillow
|
|
, h5py
|
|
, scipy
|
|
, git
|
|
, pytest-doctestplus
|
|
, pytest-httpserver
|
|
, pytest-xdist
|
|
, pytest7CheckHook
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "nibabel";
|
|
version = "5.2.1";
|
|
pyproject = true;
|
|
|
|
disabled = pythonOlder "3.8";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
hash = "sha256-tsgLLnKOS8K2XxFC2bjSKHqRAqi/hHfhFe8NgzRVmXU=";
|
|
};
|
|
|
|
nativeBuildInputs = [
|
|
hatchling
|
|
hatch-vcs
|
|
];
|
|
|
|
propagatedBuildInputs = [
|
|
numpy
|
|
packaging
|
|
] ++ lib.optionals (pythonOlder "3.9") [
|
|
importlib-resources
|
|
];
|
|
|
|
passthru.optional-dependencies = rec {
|
|
all = dicom
|
|
++ dicomfs
|
|
++ minc2
|
|
++ spm
|
|
++ zstd;
|
|
dicom = [
|
|
pydicom
|
|
];
|
|
dicomfs = [
|
|
pillow
|
|
] ++ dicom;
|
|
minc2 = [
|
|
h5py
|
|
];
|
|
spm = [
|
|
scipy
|
|
];
|
|
zstd = [
|
|
# TODO: pyzstd
|
|
];
|
|
};
|
|
|
|
nativeCheckInputs = [
|
|
git
|
|
pytest-doctestplus
|
|
pytest-httpserver
|
|
pytest-xdist
|
|
pytest7CheckHook
|
|
] ++ passthru.optional-dependencies.all;
|
|
|
|
preCheck = ''
|
|
export PATH=$out/bin:$PATH
|
|
'';
|
|
|
|
disabledTestPaths = lib.optionals (pythonAtLeast "3.12") [
|
|
# uses distutils
|
|
"nisext/tests/test_sexts.py"
|
|
];
|
|
|
|
meta = with lib; {
|
|
homepage = "https://nipy.org/nibabel";
|
|
changelog = "https://github.com/nipy/nibabel/blob/${version}/Changelog";
|
|
description = "Access a multitude of neuroimaging data formats";
|
|
license = licenses.mit;
|
|
maintainers = with maintainers; [ ashgillman ];
|
|
};
|
|
}
|