nixpkgs/pkgs/development/python-modules/nibabel/default.nix

91 lines
1.5 KiB
Nix

{ lib
, buildPythonPackage
, fetchPypi
, pythonOlder
, hatchling
, hatch-vcs
, numpy
, packaging
, importlib-resources
, pydicom
, pillow
, h5py
, scipy
, git
, pytest-doctestplus
, pytest-httpserver
, pytest-xdist
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "nibabel";
version = "5.0.1";
format = "pyproject";
disabled = pythonOlder "3.8";
src = fetchPypi {
inherit pname version;
hash = "sha256-SvZQFbTMmZQEyvA04cFcGrZ1h5XCXWkH/3T127/p9D4=";
};
nativeBuildInputs = [
hatchling
hatch-vcs
];
propagatedBuildInputs = [
numpy
packaging
] ++ lib.optionals (pythonOlder "3.9") [
importlib-resources
];
passthru.optional-dependencies = rec {
all = dicom
++ dicomfs
++ minc2
++ spm
++ zstd;
dicom = [
pydicom
];
dicomfs = [
pillow
] ++ dicom;
minc2 = [
h5py
];
spm = [
scipy
];
zstd = [
# TODO: pyzstd
];
};
nativeCheckInputs = [
git
pytest-doctestplus
pytest-httpserver
pytest-xdist
pytestCheckHook
] ++ passthru.optional-dependencies.all;
preCheck = ''
export PATH=$out/bin:$PATH
'';
disabledTests = [
# https://github.com/nipy/nibabel/issues/951
"test_filenames"
];
meta = with lib; {
homepage = "https://nipy.org/nibabel";
description = "Access a multitude of neuroimaging data formats";
license = licenses.mit;
maintainers = with maintainers; [ ashgillman ];
};
}