Weijia Wang b2a57ed0b9 Merge pull request #285423 from r-ryantm/auto-update/diamond ... diamond: 2.1.8 -> 2.1.9		2024-03-07 11:24:20 +01:00
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angsd
ants	ants: 2.5.0 -> 2.5.1	2024-01-26 01:12:12 +01:00
aragorn
astral
bamtools
bayescan
bcftools
bedops
bedtools
bftools
bioawk
blast
bowtie
bowtie2	bowtie2: 2.5.2 -> 2.5.3	2024-01-18 01:41:31 +00:00
bppsuite
bwa
bwa-mem2
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix	dcm2niix: 1.0.20211006 -> 1.0.20230411	2024-02-07 16:11:03 +10:00
deeptools	deeptools: fix build	2024-01-28 12:17:37 -08:00
delly
diamond	diamond: 2.1.8 -> 2.1.9	2024-02-01 04:22:08 +00:00
dssp
ecopcr
eggnog-mapper	eggnog-mapper: 2.1.10 -> 2.1.12	2024-01-18 19:17:47 +00:00
emboss
est-sfs
exonerate
EZminc
fastp
febio-studio
flywheel-cli
freebayes
gatk
genmap
hh-suite	hh-suite: fix build on GCC 13	2024-02-08 21:54:47 +00:00
hisat2
hmmer
igv	igv: 2.17.1 -> 2.17.2	2024-02-10 06:01:14 +00:00
inormalize	inormalize: fix build on darwin	2024-01-21 23:26:55 +01:00
iqtree
itsx
iv
jbrowse
kalign
kallisto
kent
kssd
last	last: 1541 -> 1542	2024-02-19 07:08:37 +00:00
macs2
macse
mafft
manta
megahit	megahit: fir gcc-13 build failure	2024-02-10 10:26:43 +00:00
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2
mmseqs2
mni_autoreg
mrbayes
mrtrix
muscle
N3	n3: fix build on darwin	2024-01-21 23:22:54 +01:00
nest
neuron
niftyreg
niftyseg
obitools	treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}	2024-01-30 19:56:57 +01:00
octopus	octopus-caller: fix gcc-13 build failure (drop -Werror)	2024-02-20 09:39:27 +00:00
paml
picard-tools
platypus
plink-ng
poretools
prodigal
quast
raxml
repseek
sambamba
samblaster
samtools	samtools: 1.19 -> 1.19.2	2024-01-28 12:24:10 -08:00
seaview
seqkit	seqkit: 2.6.1 -> 2.7.0	2024-02-01 04:24:02 +00:00
seqtk
snpeff
somatic-sniper
sortmerna	sortmerna: fix gcc-13 build	2024-02-25 07:49:10 +00:00
spades	SPAdes: fix build	2024-01-20 15:28:48 -03:00
sratoolkit
stacks	stacks: 2.65 -> 2.66	2024-01-24 07:54:36 +00:00
star
strelka
subread
sumatools
svaba	svaba: fix gcc-13 build failure	2024-02-11 09:59:19 +00:00
tandem-aligner
tebreak
treemix
trf
trimal
trimmomatic
truvari
varscan
vcftools
veryfasttree
whisper	whisper: enable parallel building	2024-01-25 19:27:12 +00:00
xenomapper