Matthew Bauer 74c784a79c treewide: make -Wno-error flags clang-only ... In 724e833ea2, I was a little too aggressive in enabling these flags. Many don’t work in gcc, and we should probably avoid settings them widely. This makes those flags optional on isclang		2019-04-29 21:34:24 -04:00
..
ants	treewide: remove BUILD_TESTING flag	2019-03-11 10:11:28 -04:00
bcftools
bedtools
bftools	bftools: init at 5.9.2 (#53769)	2019-01-10 18:28:28 -05:00
bowtie2	bowtie2: 2.3.4.3 -> 2.3.5 (#58014)	2019-03-31 00:37:38 +01:00
bwa
cmtk	treewide: make -Wno-error flags clang-only	2019-04-29 21:34:24 -04:00
conglomerate	lib.makePerlPath -> perlPackages.makePerlPath	2018-12-15 03:50:31 +00:00
dcm2niix
diamond
ecopcr
eggnog-mapper	eggnog-mapper: init at 1.0.3 (#58905)	2019-04-14 17:22:47 -07:00
emboss
exonerate	exonerate: init at 2.4.0	2019-04-19 14:58:57 +02:00
EZminc	treewide: remove ctest usages	2018-11-18 19:31:02 -06:00
freebayes
hisat2
hmmer	hmmer: 3.1b2 -> 3.2.1 (#50284)	2018-11-13 15:43:44 +01:00
igv	igv: 2.4.17 -> 2.4.19	2019-03-03 20:48:52 +01:00
inormalize	lib.makePerlPath -> perlPackages.makePerlPath	2018-12-15 03:50:31 +00:00
itsx	itsx: init at 1.1.1	2019-03-26 15:52:35 +01:00
iv
kallisto
megahit	megahit: init at 1.1.4	2019-03-31 05:56:14 +02:00
messer-slim	messer-slim: init at 3.2.1	2019-02-28 15:11:18 +01:00
migrate	migrate: init at 3.7.2	2019-04-05 09:01:36 +02:00
minc-tools	lib.makePerlPath -> perlPackages.makePerlPath	2018-12-15 03:50:31 +00:00
minc-widgets	lib.makePerlPath -> perlPackages.makePerlPath	2018-12-15 03:50:31 +00:00
minimap2	minimap2: 2.15 -> 2.16 (#57319)	2019-03-27 23:25:52 +01:00
mni_autoreg	treewide: remove BUILD_TESTING flag	2019-03-11 10:11:28 -04:00
mosdepth	mosdeph: fix compilation with nim 0.19	2018-10-31 22:03:27 +01:00
mrbayes
muscle
N3	lib.makePerlPath -> perlPackages.makePerlPath	2018-12-15 03:50:31 +00:00
ncbi-tools
neuron
niftyreg	niftyreg: init at 1.3.9	2018-11-16 12:24:53 -05:00
niftyseg	niftyseg: init at 1.0.0	2018-11-16 12:29:29 -05:00
paml	paml: 4.9h -> 4.9i (#57354)	2019-03-27 15:44:21 +01:00
picard-tools	picard-tools: 2.18.27 -> 2.19.0 (#59634)	2019-04-20 13:15:40 +02:00
platypus
plink
plink-ng
poretools
prodigal	Prodigal: init at 2.6.3	2019-04-19 08:38:14 +02:00
raxml
samtools
seaview
snpeff	snpeff: 4.3q -> 4.3t	2019-01-31 15:15:05 +11:00
somatic-sniper
stacks	stacks: init at 2.3e	2019-04-03 14:01:32 +02:00
star	star: 2.7.0c -> 2.7.0f	2019-04-16 18:30:49 +02:00
strelka
sumatools	sumatools: init at 1.0.34	2019-04-19 14:43:40 +02:00
varscan
vcftools