33afbf39f6
checkInputs used to be added to nativeBuildInputs. Now we have nativeCheckInputs to do that instead. Doing this treewide change allows to keep hashes identical to before the introduction of nativeCheckInputs.
115 lines
2.1 KiB
Nix
115 lines
2.1 KiB
Nix
{ lib, stdenv
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, buildPythonPackage
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, fetchPypi
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, isPy27
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# python dependencies
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, click
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, python-dateutil
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, etelemetry
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, filelock
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, funcsigs
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, future
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, mock
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, networkx
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, nibabel
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, numpy
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, packaging
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, prov
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, psutil
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, pybids
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, pydot
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, pytest
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, pytest-xdist
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, pytest-forked
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, rdflib
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, scipy
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, simplejson
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, traits
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, xvfbwrapper
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, pytest-cov
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, codecov
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, sphinx
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# other dependencies
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, which
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, bash
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, glibcLocales
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, callPackage
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# causes Python packaging conflict with any package requiring rdflib,
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# so use the unpatched rdflib by default (disables Nipype provenance tracking);
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# see https://github.com/nipy/nipype/issues/2888:
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, useNeurdflib ? false
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}:
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let
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# This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
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neurdflib = callPackage ./neurdflib.nix { };
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in
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buildPythonPackage rec {
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pname = "nipype";
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version = "1.8.5";
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disabled = isPy27;
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src = fetchPypi {
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inherit pname version;
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sha256 = "sha256-44QnQ/tmBGTdKd5z3Pye9m0nO+ELzGQFn/Ic1e8ellU=";
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};
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postPatch = ''
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substituteInPlace nipype/interfaces/base/tests/test_core.py \
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--replace "/usr/bin/env bash" "${bash}/bin/bash"
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'';
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nativeBuildInputs = [
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sphinx
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];
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propagatedBuildInputs = [
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click
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python-dateutil
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etelemetry
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filelock
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funcsigs
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future
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networkx
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nibabel
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numpy
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packaging
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prov
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psutil
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pydot
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scipy
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simplejson
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traits
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xvfbwrapper
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] ++ [ (if useNeurdflib then neurdflib else rdflib) ];
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nativeCheckInputs = [
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pybids
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codecov
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glibcLocales
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mock
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pytest
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pytest-forked
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pytest-xdist
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pytest-cov
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which
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];
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# checks on darwin inspect memory which doesn't work in build environment
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doCheck = !stdenv.isDarwin;
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# ignore tests which incorrect fail to detect xvfb
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checkPhase = ''
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LC_ALL="en_US.UTF-8" pytest nipype/tests -k 'not display'
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'';
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pythonImportsCheck = [ "nipype" ];
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meta = with lib; {
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homepage = "https://nipy.org/nipype/";
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description = "Neuroimaging in Python: Pipelines and Interfaces";
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license = licenses.bsd3;
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maintainers = with maintainers; [ ashgillman ];
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};
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}
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