37 lines
938 B
Nix
37 lines
938 B
Nix
{stdenv, fetchFromGitHub, cmake, zlib, python2}:
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stdenv.mkDerivation rec {
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name = "strelka-${version}";
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version = "2.9.5";
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src = fetchFromGitHub {
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owner = "Illumina";
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repo = "strelka";
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rev = "v${version}";
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sha256 = "0x4a6nkx1jnyag9svghsdjz1fz6q7qx5pn77wphdfnk81f9yspf8";
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};
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buildInputs = [ cmake zlib python2 ];
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preConfigure = ''
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sed -i 's|/usr/bin/env python|${python2}/bin/python|' src/python/lib/makeRunScript.py
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patchShebangs .
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'';
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postFixup = ''
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pushd $out/lib/python/pyflow
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sed -i 's|/bin/bash|${stdenv.shell}|' pyflowTaskWrapper.py
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rm pyflowTaskWrapper.pyc
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echo "import pyflowTaskWrapper" | python2
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popd
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'';
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meta = with stdenv.lib; {
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description = "Germline and small variant caller";
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license = licenses.gpl3;
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homepage = https://github.com/Illumina/strelka;
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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