92 lines
2.1 KiB
Nix
92 lines
2.1 KiB
Nix
{ stdenv, lib, fetchFromGitHub, python, makeWrapper
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, eigen, fftw, libtiff, libpng, zlib, ants, bc
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, qt5, libGL, libGLU, libX11, libXext
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, withGui ? true }:
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stdenv.mkDerivation rec {
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pname = "mrtrix";
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version = "3.0.2";
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src = fetchFromGitHub {
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owner = "MRtrix3";
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repo = "mrtrix3";
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rev = version;
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sha256 = "0p4d1230j6664rnb9l65cpyfj9ncbcm39yv1r9y77br9rkkv1za3";
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fetchSubmodules = true;
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};
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nativeBuildInputs = [ eigen makeWrapper ] ++ lib.optional withGui qt5.wrapQtAppsHook;
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buildInputs = [
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ants
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python
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fftw
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libtiff
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libpng
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zlib
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] ++ lib.optionals withGui [
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libGL
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libGLU
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libX11
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libXext
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qt5.qtbase
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qt5.qtsvg
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];
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installCheckInputs = [ bc ];
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postPatch = ''
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patchShebangs ./build ./configure ./run_tests ./bin/*
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# patching interpreters before fixup is needed for tests:
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patchShebangs ./bin/*
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patchShebangs testing/binaries/data/vectorstats/*py
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substituteInPlace ./run_tests \
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--replace 'git submodule update --init $datadir >> $LOGFILE 2>&1' ""
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'';
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configurePhase = ''
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export EIGEN_CFLAGS="-isystem ${eigen}/include/eigen3"
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unset LD # similar to https://github.com/MRtrix3/mrtrix3/issues/1519
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./configure ${lib.optionalString (!withGui) "-nogui"};
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'';
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buildPhase = ''
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./build
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(cd testing && ../build)
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'';
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installCheckPhase = ''
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./run_tests units
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./run_tests binaries
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# can also `./run_tests scripts`, but this fails due to lack of FSL package
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# (and there's no convenient way to disable individual tests)
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'';
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doInstallCheck = true;
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installPhase = ''
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runHook preInstall
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mkdir -p $out
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cp -ar lib $out/lib
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cp -ar bin $out/bin
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runHook postInstall
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'';
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postInstall = ''
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for prog in $out/bin/*; do
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if [[ -x "$prog" ]]; then
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wrapProgram $prog --prefix PATH : ${lib.makeBinPath [ ants ]}
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fi
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done
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'';
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meta = with lib; {
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homepage = "https://github.com/MRtrix3/mrtrix3";
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description = "Suite of tools for diffusion imaging";
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maintainers = with maintainers; [ bcdarwin ];
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platforms = platforms.linux;
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license = licenses.mpl20;
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};
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}
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