Ryan Mulligan ad59a67ec0 Merge pull request #134444 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.25.1 -> 2.25.7		2021-08-17 16:47:31 -07:00
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ants
aragorn
bayescan
bcftools	bcftools: 1.11 -> 1.13	2021-07-10 10:15:10 +00:00
bedops	bedops: 2.4.39 -> 2.4.40	2021-07-23 01:02:40 +00:00
bedtools
bftools
blast
bowtie
bowtie2	Merge pull request #111691 from jbedo/bowtie2	2021-08-07 04:03:47 +03:00
bppsuite
bwa
cd-hit	perlPackages.ImageMagick: rename from perlPackages.PerlMagick	2021-08-02 20:05:00 +03:00
clustal-omega
cmtk
conglomerate
dcm2niix
deeptools
delly
diamond
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc
fastp
freebayes
hisat2
hmmer
igv
inormalize
itsx
iv
kallisto
kent
kssd
last
lumpy
MACS2
macse	treewide: convert phases that contain ":" to dont* = true (#130500)	2021-07-18 23:42:48 +02:00
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2	minimap2: 2.17 -> 2.22	2021-08-14 15:55:35 +00:00
mni_autoreg
mosdepth	mosdepth: 0.3.1 -> 0.3.2	2021-07-27 09:52:22 +10:00
mrbayes	mrbayes: 3.2.7 -> 3.2.7a	2021-07-27 14:30:23 +02:00
mrtrix
muscle
N3
ncbi-tools
neuron
niftyreg
niftyseg
obitools
octopus
paml
picard-tools	picard-tools: 2.25.1 -> 2.25.7	2021-08-17 13:50:42 +00:00
platypus
plink-ng
poretools
prodigal
quast
raxml
sambamba
samblaster
samtools
seaview
snpeff
somatic-sniper
sortmerna
spades
stacks
star
strelka
sumatools
svaba
tebreak
trimal
truvari	truvari: 2.0.2 -> 2.1.1 (#126839)	2021-06-15 22:14:20 +02:00
varscan	varscan: deprecate phases	2021-08-03 00:04:16 +02:00
vcftools
whisper
xenomapper