b51018ed2e
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
106 lines
4.1 KiB
Nix
106 lines
4.1 KiB
Nix
{ stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
|
|
, libtiff, ncurses, pango, pcre, perl, readline, tcl, texLive, tk, xz, zlib
|
|
, less, texinfo, graphviz, icu, pkgconfig, bison, imake, which, jdk, openblas
|
|
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
|
|
, withRecommendedPackages ? true
|
|
, enableStrictBarrier ? false
|
|
, javaSupport ? (!stdenv.hostPlatform.isAarch32 && !stdenv.hostPlatform.isAarch64)
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
name = "R-3.5.1";
|
|
|
|
src = fetchurl {
|
|
url = "https://cran.r-project.org/src/base/R-3/${name}.tar.gz";
|
|
sha256 = "0463bff5eea0f3d93fa071f79c18d0993878fd4f2e18ae6cf22c1639d11457ed";
|
|
};
|
|
|
|
buildInputs = [
|
|
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
|
|
pango pcre perl readline texLive xz zlib less texinfo graphviz icu
|
|
pkgconfig bison imake which openblas curl
|
|
] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ tcl tk ]
|
|
++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ]
|
|
++ stdenv.lib.optional javaSupport jdk;
|
|
|
|
patches = [ ./no-usr-local-search-paths.patch ];
|
|
|
|
prePatch = stdenv.lib.optionalString stdenv.isDarwin ''
|
|
substituteInPlace configure --replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
|
|
'';
|
|
|
|
preConfigure = ''
|
|
configureFlagsArray=(
|
|
--disable-lto
|
|
--with${stdenv.lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
|
|
--with-blas="-L${openblas}/lib -lopenblas"
|
|
--with-lapack="-L${openblas}/lib -lopenblas"
|
|
--with-readline
|
|
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
|
|
--with-cairo
|
|
--with-libpng
|
|
--with-jpeglib
|
|
--with-libtiff
|
|
--with-ICU
|
|
${stdenv.lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
|
|
--enable-R-shlib
|
|
AR=$(type -p ar)
|
|
AWK=$(type -p gawk)
|
|
CC=$(type -p cc)
|
|
CXX=$(type -p c++)
|
|
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
|
|
${stdenv.lib.optionalString javaSupport "JAVA_HOME=\"${jdk}\""}
|
|
RANLIB=$(type -p ranlib)
|
|
R_SHELL="${stdenv.shell}"
|
|
'' + stdenv.lib.optionalString stdenv.isDarwin ''
|
|
--without-tcltk
|
|
--without-aqua
|
|
--disable-R-framework
|
|
OBJC="clang"
|
|
CPPFLAGS="-isystem ${libcxx}/include/c++/v1"
|
|
LDFLAGS="-L${libcxx}/lib"
|
|
'' + ''
|
|
)
|
|
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
|
|
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
|
|
'';
|
|
|
|
installTargets = [ "install" "install-info" "install-pdf" ];
|
|
|
|
doCheck = true;
|
|
preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'";
|
|
|
|
enableParallelBuilding = true;
|
|
|
|
setupHook = ./setup-hook.sh;
|
|
|
|
meta = with stdenv.lib; {
|
|
homepage = http://www.r-project.org/;
|
|
description = "Free software environment for statistical computing and graphics";
|
|
license = licenses.gpl2Plus;
|
|
|
|
longDescription = ''
|
|
GNU R is a language and environment for statistical computing and
|
|
graphics that provides a wide variety of statistical (linear and
|
|
nonlinear modelling, classical statistical tests, time-series
|
|
analysis, classification, clustering, ...) and graphical
|
|
techniques, and is highly extensible. One of R's strengths is the
|
|
ease with which well-designed publication-quality plots can be
|
|
produced, including mathematical symbols and formulae where
|
|
needed. R is an integrated suite of software facilities for data
|
|
manipulation, calculation and graphical display. It includes an
|
|
effective data handling and storage facility, a suite of operators
|
|
for calculations on arrays, in particular matrices, a large,
|
|
coherent, integrated collection of intermediate tools for data
|
|
analysis, graphical facilities for data analysis and display
|
|
either on-screen or on hardcopy, and a well-developed, simple and
|
|
effective programming language which includes conditionals, loops,
|
|
user-defined recursive functions and input and output facilities.
|
|
'';
|
|
|
|
platforms = platforms.all;
|
|
hydraPlatforms = platforms.linux;
|
|
|
|
maintainers = [ maintainers.peti ];
|
|
};
|
|
}
|