nixpkgs/pkgs/applications/science/biology
Jan Tojnar e6c0c98940
Merge branch 'master' into staging-next
zynaddsubfx conflict has been updated to 3.0.1, which conflicted with rewrite after 3.0.5 update on a different branch.
2021-01-08 02:07:34 +01:00
..
ants treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
aragorn aragorn: fix build on darwin 2020-09-23 20:45:21 -07:00
bayescan
bcftools bcftools: 1.10.2 -> 1.11 2020-09-24 18:53:07 +00:00
bedtools treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
bftools
blast
bowtie bowtie: init at at 1.3.0 2021-01-02 19:46:59 +01:00
bowtie2 bowtie2: 2.3.5.1 -> 2.4.2 2021-01-02 22:18:32 +01:00
bppsuite
bwa bwa: expand supported platforms 2020-11-30 09:46:51 +11:00
cd-hit
clustal-omega
cmtk treewide: cmake buildInputs to nativeBuildInputs, minor cleanups 2021-01-01 11:52:33 +07:00
conglomerate conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
dcm2niix treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
deeptools deeptools: Fix tests 2020-11-25 21:36:37 +01:00
delly delly: 0.8.5 -> 0.8.6 2020-12-14 09:55:57 +11:00
diamond
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
fastp fastp: init 0.20.1 2021-01-07 18:24:19 +11:00
freebayes
hisat2
hmmer hmmer: 3.3.1 -> 3.3.2 2020-12-02 09:00:15 +00:00
igv igv: 2.8.12 -> 2.8.13 2020-11-28 02:18:00 +00:00
inormalize inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
itsx
iv
kallisto treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
kent kent: init at 404 2020-10-01 19:50:37 +02:00
kssd
last last: 1145 -> 1170 2021-01-05 10:29:31 +11:00
lumpy lumpy: 0.3.0 -> 0.3.1 2020-10-30 01:28:00 +01:00
macse
manta
megahit treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
messer-slim treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
migrate
minc-tools treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
minc-widgets
minia
minimap2
mni_autoreg mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
mosdepth Merge pull request #98363 from jbedo/mosdepth 2020-11-25 23:55:47 +01:00
mrbayes
mrtrix mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
muscle
N3 n3: 2017-09-18 -> 2018-08-09 2020-10-06 15:31:16 -04:00
ncbi-tools
neuron
niftyreg treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
niftyseg treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
obitools treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
octopus octopus-caller: 0.6.3 -> 0.7.0 2020-09-22 08:43:04 +10:00
paml
picard-tools picard-tools: 2.23.8 -> 2.23.9 2020-12-10 23:06:36 +00:00
platypus
plink-ng
poretools
prodigal
quast
raxml raxml: cleanup 2021-01-04 11:02:16 +01:00
sambamba
samblaster samblaster: 0.1.24 -> 0.1.26 2020-11-12 01:43:02 +00:00
samtools samtools: 1.10 -> 1.11 2020-10-29 18:27:22 +01:00
seaview
snpeff treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
somatic-sniper treewide: cmake buildInputs to nativeBuildInputs, minor cleanups 2021-01-01 11:52:33 +07:00
sortmerna
spades SPAdes: add python dependency 2020-12-21 08:29:57 +11:00
stacks
star star: 2.7.5c -> 2.7.6a 2020-11-23 20:40:05 +01:00
strelka
sumatools
svaba
tebreak tebreak: Fix tests 2020-11-25 21:36:38 +01:00
trimal
truvari truvari: 1.3.4 -> 2.0.2, fixing build 2020-09-20 12:25:17 +01:00
varscan varscan: 2.4.2 -> 2.4.4 2021-01-05 10:55:28 +11:00
vcftools
whisper
xenomapper