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bppsuite: remove stdenv overrides

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This commit is contained in:
Weijia Wang 2023-12-10 02:24:15 +01:00
parent 9aedfde2aa
commit dd6728ca40
2 changed files with 13 additions and 16 deletions
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9
pkgs/development/libraries/science/biology/bpp-core/default.nix
View file

@ -1,4 +1,4 @@
{ lib, stdenv, fetchFromGitHub, cmake }: { lib, stdenv, fetchFromGitHub, fetchpatch, cmake }:
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "bpp-core"; pname = "bpp-core";
@ -10,6 +10,13 @@ stdenv.mkDerivation rec {
sha256 = "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv"; sha256 = "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv";
}; };
patches = [
(fetchpatch {
url = "https://github.com/BioPP/bpp-core/commit/d450e8033b06e80dff9c2236fb7ce1f3ced5dcbb.patch";
hash = "sha256-9t68mrK7KNs5BxljKMaA+XskCcKDNv8DNCVUYunoNdw=";
})
];
nativeBuildInputs = [ cmake ]; nativeBuildInputs = [ cmake ];
postFixup = '' postFixup = ''

20
pkgs/top-level/all-packages.nix
View file

@ -38935,25 +38935,15 @@ with pkgs;
blast-bin = callPackage ../applications/science/biology/blast/bin.nix { }; blast-bin = callPackage ../applications/science/biology/blast/bin.nix { };
bpp-core = callPackage ../development/libraries/science/biology/bpp-core { bpp-core = callPackage ../development/libraries/science/biology/bpp-core { };
stdenv = gcc10StdenvCompat;
};
bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl { bpp-phyl = callPackage ../development/libraries/science/biology/bpp-phyl { };
stdenv = gcc10StdenvCompat;
};
bpp-popgen = callPackage ../development/libraries/science/biology/bpp-popgen { bpp-popgen = callPackage ../development/libraries/science/biology/bpp-popgen { };
stdenv = gcc10StdenvCompat;
};
bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq { bpp-seq = callPackage ../development/libraries/science/biology/bpp-seq { };
stdenv = gcc10StdenvCompat;
};
bppsuite = callPackage ../applications/science/biology/bppsuite { bppsuite = callPackage ../applications/science/biology/bppsuite { };
stdenv = gcc10StdenvCompat;
};
cd-hit = callPackage ../applications/science/biology/cd-hit { cd-hit = callPackage ../applications/science/biology/cd-hit {
inherit (llvmPackages) openmp; inherit (llvmPackages) openmp;