d97f7d3b89
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/RAxML/versions. These checks were done: - built on NixOS - /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12/bin/raxmlHPC-PTHREADS-SSE3 passed the binary check. - 1 of 1 passed binary check by having a zero exit code. - 0 of 1 passed binary check by having the new version present in output. - found 8.2.12 with grep in /nix/store/w8iy7fvdwhjw7zx1dkga3v56fz59s7r8-RAxML-8.2.12 - directory tree listing: https://gist.github.com/8a2b70b299e53bfee9f18d2ab8cd5f9f - du listing: https://gist.github.com/02803409663f19671adc6be233a327fd
42 lines
1 KiB
Nix
42 lines
1 KiB
Nix
{ stdenv
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, fetchFromGitHub
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, zlib
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, pkgs
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, mpi ? false
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}:
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stdenv.mkDerivation rec {
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pname = "RAxML";
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version = "8.2.12";
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name = "${pname}-${version}";
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src = fetchFromGitHub {
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owner = "stamatak";
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repo = "standard-${pname}";
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rev = "v${version}";
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sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
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};
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buildInputs = if mpi then [ pkgs.openmpi ] else [];
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# TODO darwin, AVX and AVX2 makefile targets
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buildPhase = if mpi then ''
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make -f Makefile.MPI.gcc
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'' else ''
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make -f Makefile.SSE3.PTHREADS.gcc
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'';
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installPhase = if mpi then ''
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mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
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'' else ''
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mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
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'';
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meta = with stdenv.lib; {
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description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
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license = licenses.gpl3;
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homepage = https://sco.h-its.org/exelixis/web/software/raxml/;
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maintainers = [ maintainers.unode ];
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platforms = [ "i686-linux" "x86_64-linux" ];
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};
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}
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